On Wed, 22 Jan 2014, Luis Ibanez wrote: > Sounds good.
> Yes, This looks great. > We will appreciate anything that will reduce the barrier > of entry for learning M/MUMPS. > Certainly the need for setting those environment variables > (although not particularly difficult) is just one more opportunity > for typos, mistakes and things going wrong, which can lead to > a first visitor to M / MUMPS to have a frustrating experience. > I know that I have run in trouble many times due to simple errors > in those environment variables. > It is great that they considered the case of having multiple version > installed of the same tools. Which is one of the scenarios that > Bhaskar has been very keen to make sure that are supported. > This will also be very useful for the VistA package. Since it will > also enable to have multiple installations running side by side. > So, how do we start using the environment-modules ? Recommends: environment-modules + add a Modulesfile under whatever that versioned path I have was blurbing about. then theoretically modules should be enabled upon login and people would need just 'load' a corresponding module > (I apologize, if I missed it from your link to the email thread). > Could you suggest an example that we could follow ? I wish I could give you an example in the archive, but I haven't got chance to start using it myself. for ants meanwhile I did following (do not remember if tested 100% working ;) ), not sure if that is an ideal setup either. I have backport builds of modules for NeuroDebian but didn't upload yet -- wanted first to make at least package use them... got short on time... I will CC Alastair -- may be he could guide us a bit: --- a/debian/control +++ b/debian/control @@ -20,6 +20,7 @@ Vcs-Browser: http://git.debian.org/?p=pkg-exppsy/ants.git;a=summary Package: ants Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} +Recommends: environment-modules Suggests: fsl, gridengine-client Description: advanced normalization tools for brain and image analysis Advanced Normalization Tools (ANTS) is an ITK-based suite of diff --git a/debian/dirs b/debian/dirs index a707198..be88593 100644 --- a/debian/dirs +++ b/debian/dirs @@ -1,2 +1,3 @@ usr/lib/ants usr/bin +usr/share/modules/modulefiles/ants diff --git a/debian/rules b/debian/rules index c3d8357..678f9cc 100755 --- a/debian/rules +++ b/debian/rules @@ -5,6 +5,8 @@ srcpkg = $(shell LC_ALL=C dpkg-parsechangelog | grep '^Source:' | cut -d ' ' -f debver = $(shell LC_ALL=C dpkg-parsechangelog | grep '^Version:' | cut -d ' ' -f 2,2 ) uver = $(shell echo $(debver) | cut -d '-' -f 1,1 ) +modulesfile = debian/ants.environment-modules + export http_proxy=http://127.0.0.1:9/ export https_proxy=http://127.0.0.1:9/ @@ -44,7 +46,10 @@ override_dh_auto_configure: -DEXECUTABLE_OUTPUT_PATH:PATH=$(DESTBINDIR) \ --debug-output -override_dh_auto_build: +%modules: %modules.in + sed -e 's,$$UVERSION,$(uver),g' $< >| $@ + +override_dh_auto_build: $(modulesfile) dh_auto_build : Build manpages cd `/bin/ls -d obj-*/bin` && mkdir -p ../man && \ @@ -71,6 +76,8 @@ override_dh_auto_install: done : Install shell scripts install -t debian/ants/usr/lib/ants Scripts/* + : Install modules file + install -t debian/ants/usr/share/modules/modulefiles/ants $(modulesfile) : Adjust ANTSPATH cd debian/ants/usr/lib/ants && sed -ie 's,\([^"=]*\(/bin/ants\|ANTS/release/bin\)\),/usr/lib/ants,g' *.sh *.pl : Install manpages @@ -78,7 +85,7 @@ override_dh_auto_install: override_dh_auto_clean: dh_auto_clean - rm -rf $(BUILDDIR) + rm -rf $(BUILDDIR) debian/ants.environment-modules # upstream tests use some tiny dataset for tests, which # they deposited online instead of keeping under the GIT --- /dev/null +++ b/debian/ants.environment-modules.in @@ -0,0 +1,20 @@ +#%Module1.0##################################################################### +## +## ants modulefile +## +proc ModulesHelp { } { + global version + + puts stderr "\tLoads the ANTs (advanced normalization tools) environment.\n" + puts stderr "\tIt will adjust PATH and set ANTSPATH so that all ANTs " + puts stderr "\tbecome available in your environment.\n" + puts stderr "\tVersion $version\n" +} + +module-whatis "enable ANTs binaries" + +# for Tcl script use only +set version "$UVERSION" + +setenv ANTSPATH "/usr/lib/ants/" +prepend-path PATH /usr/lib/ants -- Yaroslav O. Halchenko, Ph.D. http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org Senior Research Associate, Psychological and Brain Sciences Dept. Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419 WWW: http://www.linkedin.com/in/yarik -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: http://lists.debian.org/[email protected]
