On 30/07/13 14:25, johannes.ro...@mdc-berlin.de wrote: > Hey Tony, Hi, Johannes.
Sorry about my late reply - I've been on holiday in California... [Please note my new email addrerss: I no longer work at the University of Edinburgh. I'm back working at the University of Aberdeen again] > yesterday I published release 2.4 of Flexbar on sourceforge. I made > sevaral extensions, including reading and writing compressed files, > support for usage of stdin (first read file) and stdout (except > paired reads). I also improved various statistics and simplified the > format option, which only has to be set in case of quality-based > trimming with a fastq file now. Moreover, I adapted the new SeqAn > 1.4.1 release. > > It should work to use SeqAn 1.4 or 1.4.1 with Flexbar. I excluded the > SeqAn library from the src download this time. The thought is that > SeqAn can be used in debian, but I saw that SeqAn 1.4 is not yet > available. Let me know if you prefer to have SeqAn in the src > download tarball as long as version 1.4 is not in debian. I could > exchange it with a download that includes the SeqAn library. > > Furthermore, I remarked that the argument parser provides the > possibility to write out the help screen in man document format, > which could help you to prepare man pages for debian. Today, I added > a hidden option (--man) to write out the help as man formatted text. > This feature is unfortunately not part of the new Flexbar release, > but can be used with a fresh checkout of the trunk version. I've CC'ed this Andreas to ask for his advice about how to proceed with your new upstream version. Thanks again for Flexbar, which I continue to find very useful! Tony. -- Dr. A.J.Travis, University of Aberdeen, Institute of Biological and Environmental Sciences, Cruickshank Building, St. Machar Drive, Aberdeen AB24 3UU, Scotland, UK. tel +44(0)1224 272700, fax +44 (0)1224 272 396 http://www.abdn.ac.uk, mailto:tony.tra...@abdn.ac.uk, skype:ajtravis -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/520f77b0.4060...@abdn.ac.uk
