Hi Andreas, I'm not familiar enough with Tophat to be able to tell if any of these bugs are critical. They look like nice to have, but critical? I couldn't tell. I think I prefer to leave this package as unreleased or upload it to experimental until the freeze is over.
Thanks, Carlos On Sat, Nov 3, 2012 at 3:11 AM, Andreas Tille <andr...@an3as.eu> wrote: > Hi Carlos, > > could you please mention whether one of those bugs below could be > considered as "Release Critical"? If yes, we should file an apropriate > bug to the Debian BTS. Otherwise we should probably consider an upload > to experimental due to the rules in the times of freeze. > > Kind regards and thanks for your preparations > > Andreas. > > On Fri, Nov 02, 2012 at 10:38:39PM -0400, Carlos Borroto wrote: >> Hi, >> >> New version Tophat 2.0.6 is ready for upload. I used >> debian/get-orig-source to make sure SeqAn was removed correctly. >> >> This is a bug fix realease. Upstream changelog: >> TopHat 2.0.6 release 11/02/2012 >> Version 2.0.6 is a maintenance release addressing some issues found in >> the 2.0.5 release: >> - corrected the indel finding algorithm that caused segmentation fault >> in certain cases (long_spanning_reads and tophat_reports) >> - fixed the Bowtie version checking code, adding support for newer, >> non-beta Bowtie2 versions >> - several minor fixes in the fusion alignment algorithm >> - fixed an incompatibility issue with Python versions older than 2.6 >> (restoring Python 2.4 compatibility) >> - fixed and improved the resuming option (-R/--resume) to better >> handle various failure/resume situations >> - added a warning about Bowtie1 and Bowtie2 index files in the same >> directory (causing trouble if they were built for different genomic >> sequences) >> >> Thanks, >> Carlos >> >> >> -- >> To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org >> with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org >> Archive: >> http://lists.debian.org/cabgghblnplnktv23q5mkxwauxf9ilpawasmzrkggbsza6zw...@mail.gmail.com >> >> > > -- > http://fam-tille.de -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/cabgghbjojhzxifpbdvcdlucvkjoknl_4o5p3cqsp8684ujl...@mail.gmail.com
