Hi, As a way of getting familiar with git-buildpackage and company. I have been trying to clone several packages git repository and getting them onto the PPA. I was able to do so for samtools, only for Oneiric as I feel safer staying out of Lucid LTS until I gain more experience. I created a new branch and tag on the samtools git repository to show the source of the package.
Trying now to do the same for cufflinks, but the build if failing: https://launchpadlibrarian.net/88726220/buildlog_ubuntu-oneiric-amd64.cufflinks_1.2.1-1~oneiric1_FAILEDTOBUILD.txt.gz I think I can see the problem, on that log I see the package is been build without the patches, so the BAM header files aren't been found: dh_quilt_unpatch Removing patch 0003-fix_includes_path.patch Restoring src/hits.h Removing patch 0002-bam2samtools.patch Restoring ax_bam.m4 Removing patch 0001-fix_spelling.patch Restoring src/locfit/arith.c Restoring src/locfit/lfd.c No patches applied dh_clean make[1]: Leaving directory `/build/buildd/cufflinks-1.2.1' debian/rules build dh build --with autoreconf dh_testdir dh_autoreconf ... ... checking for bamlib... configure: error: We could not detect the bam libraries (version or higher). If you have a staged bam library (still not installed) please specify $BAM_ROOT in your environment and do not give a PATH to --with-bam option. If you are sure you have bam installed, then check your version number looking in <bam/version.hpp>. See http://randspringer.de/bam for more documentation. In my local environment using cowbuilder, the patches are applied: dh_quilt_unpatch Removing patch 0003-fix_includes_path.patch Restoring src/hits.h Removing patch 0002-bam2samtools.patch Restoring ax_bam.m4 Removing patch 0001-fix_spelling.patch Restoring src/locfit/lfd.c Restoring src/locfit/arith.c No patches applied dh_clean make[1]: Leaving directory `/tmp/buildd/cufflinks-1.2.1' dpkg-source -b cufflinks-1.2.1 dpkg-source: info: using source format `3.0 (quilt)' dpkg-source: warning: patches have not been applied, applying them now (use --no-preparation to override) dpkg-source: info: applying 0001-fix_spelling.patch dpkg-source: info: applying 0002-bam2samtools.patch dpkg-source: info: applying 0003-fix_includes_path.patch dpkg-source: info: building cufflinks using existing ./cufflinks_1.2.1.orig.tar.gz dpkg-source: info: building cufflinks in cufflinks_1.2.1-1~oneiric1.debian.tar.gz dpkg-source: info: building cufflinks in cufflinks_1.2.1-1~oneiric1.dsc debian/rules build dh build --with autoreconf dh_testdir dh_autoreconf ... ... checking for bamlib... yes Is there a reason why is this happening? Thanks, Carlos -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/CABgGhB+EiQefCwXwihoyLyCHg=325orrx9kvyfoskfyk9yz...@mail.gmail.com
