Hi Nick,
On Thu, Dec 08, 2011 at 05:24:51PM +0000, Nick James wrote:
> You probably know this, but bsub is the submission command for the
> LSF computer cluster submission software.
Well, please do not overestimate my knowledge. I did not worked with
clusters so far.
> It is what the Ensembl
> team use internally for batch submission.
Iven in this case the script looks somehow suspicious.
> My point is that there are many utility scripts ( like
> ensembl-variation/scripts/import/run.me ) hanging about in the
> ensembl code that are not needed at all in order to have a fully
> functioning website and API code. They are only used internally by
> the Ensembl team as they develop new data for a new release. As they
> are only intended for internal use they tend to be very tied to the
> exact platform they develop on ( in this case LSF, with perl in
> /usr/local/ensembl/bin/perl and a shared dir on /ecs2/scratch3/ ).
>
> My suggestion is that we just ignore this script as it is not needed
> for Ensembl to run.
Thanks for the hint. Could you spot more such stuff which is not
needed to run?
Kind regards
Andreas.
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