Hi Olivier, I didn't think gbrowse was available for ubuntu yet--thanks for clarifying (though the next release is not far away).
I doubt if there is an easy path to using debian-med with the current gmod server, so I'll set about building it from source. Not a big deal (and I should bug my IT folks about updating the server! :-) Thanks, Scott On Fri, Aug 5, 2011 at 1:27 PM, Olivier Sallou <[email protected]> wrote: > Hi, > > at first, i was wrong, gbrowse is not available on Ubuntu. It is in Ubuntu > pipe for next version, but not available on current version... Sorry > If needed on ubuntu we may try to add it to our ubuntu launchpad, work > depends on dependencies.... > > Now, with your present problems, I do not know how update mechanism works vs > versions but: > either it points to v6 and you will update with v6 package which may cause > some issues > either it points to v5 and gbrowse won't be available. > As issue is with perl dependencies, I cannot say what to do with those.... > testing or unstable shouldn't be the issue (my point was to go to testing > which is more stable as package is available there). > > Maybe someone on the list could help? I should investigate on debian update > mechanisms.... > > Olivier > > ----- Mail original ----- >> De: "Scott Cain" <[email protected]> >> À: "Olivier Sallou" <[email protected]> >> Cc: [email protected] >> Envoyé: Vendredi 5 Août 2011 19:02:48 >> Objet: Re: "Could not perform immediate configuration" with debian-med >> Hi Olivier, >> >> I'm using Debian 5.0.8 because that is what's running gmod.org, >> because that's what the IT folks gave me. I plan on getting back to >> ubuntu soon. >> >> If I take out unstable and re-update and try again, I get the same >> thing. Is this likely to be fixable, or should I just go back to >> installing from source? When you say that my "deb configuration >> points to a 6.x repository", do you mean that the line I added for >> testing is for debian 6, and there is not a corresponding one for >> debian 5? That sounds like a showstopper for this server. >> >> Thanks, >> Scott >> >> >> On Fri, Aug 5, 2011 at 12:52 PM, Olivier Sallou >> <[email protected]> wrote: >> > Hi Scott, >> > using testing should be enough, latest version of gbrowse has been >> > moved to >> > testing. >> > Still regarding gbrowse, main is enough. >> > >> > Furthermore, version 2.38~dfsg-1 is also available on Ubuntu, why >> > did you >> > go to Debian ? (this is nice, but if it for GBrowse only , this is >> > not >> > necessary) >> > >> > Current version of Debian is 6.x (stable and others), maybe some >> > perl >> > packages are failing on this version. >> > your deb configuration points to a 6.x repository. >> > >> > Regards >> > >> > Olivier >> > >> > Le 8/5/11 6:24 PM, Scott Cain a écrit : >> > >> > All I did was add these two lines to my sour >> > >> > -- >> > Olivier Sallou >> > IRISA / University of Rennes 1 >> > Campus de Beaulieu, 35000 RENNES - FRANCE >> > Tel: 02.99.84.71.95 >> > >> > gpg key id: 4096R/326D8438 (pgp.mit.edu) >> > Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 >> > >> > >> >> >> >> -- >> ------------------------------------------------------------------------ >> Scott Cain, Ph. D. scott at scottcain dot net >> GMOD Coordinator (http://gmod.org/) 216-392-3087 >> Ontario Institute for Cancer Research > -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: http://lists.debian.org/ca+jtaox61jxbbodqg9qvnmzwxihkqhifc48by+fctwbo4vt...@mail.gmail.com
