Package: wnpp Severity: wishlist Owner: Charles Plessy <ple...@debian.org>
Package name : bwa Version : 0.5.3 Upstream Author : Heng Li and others, see: http://bio-bwa.sourceforge.net/bwa.shtml URL : http://bio-bwa.sourceforge.net License : GPL Programming Lang: C Description : Burrows-Wheeler Aligner Since I tried it at work, I took the opportunity to package bwa, the Burrows-Wheeler Aligner. Here are copies of the Debian control and copyright files. Have a nice day, -- Charles Plessy, Debian Med packaging team, Tsurumi, Kanagawa, Japan. Source: bwa Section: science Priority: optional Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> DM-Upload-Allowed: yes Uploaders: Charles Plessy <ple...@debian.org> Build-Depends: cdbs, debhelper (>= 7), zlib1g-dev Standards-Version: 3.8.3 Homepage: http://bio-bwa.sourceforge.net/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/bwa/trunk/?rev=0&sc=0 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/bwa/trunk/ Package: bwa Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} Suggests: samtools Description: Burrows-Wheeler Aligner Burrows-Wheeler Aligner (BWA) is a program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome. It implements two algorithms, bwa-short and dBWT-SW. The former works for query sequences shorter than 200 bp and the latter for longer sequences up to around 100 kbp. Both algorithms do gapped alignment. They are usually more accurate and faster on queries with low error rates. Name : Burrows-Wheeler Aligner Contact : bio-bwa-h...@lists.sourceforge.net Source : http://downloads.sourceforge.net/project/bio-bwa/bwa-0.5.3.tar.bz2 Copyright : © 2008 Genome Research Ltd (GRL) 2008, by Heng Li <l...@sanger.ac.uk> © 2003-2006, 2008, 2009, by Heng Li <lh3...@gmail.com> © 2008, by Attractive Chaos <attractivech...@aol.co.uk> © 2008 Yuta Mori License : MIT Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. Files : bwt_gen/bwt_gen.* Copyright : © 2004, Wong Chi Kwong License : GPL-2+ This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. Files : bwt_gen/QSufSort.* Copyright : 1999, N. Jesper Larsson License : This software may be used freely for any purpose. However, when distributed, the original source must be clearly stated, and, when the source code is distributed, the copyright notice must be retained and any alterations in the code must be clearly marked. No warranty is given regarding the quality of this software. -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
