Nilesh Patra pushed to branch master at Debian Med / segemehl
Commits: e4249723 by Nilesh Patra at 2021-02-18T15:06:28+05:30 Do not hardcode pkg-config to fix non cross-buildability - - - - - d844691a by Nilesh Patra at 2021-02-18T15:14:13+05:30 d/u/metadata: Update URLs - - - - - 2835fcd8 by Nilesh Patra at 2021-02-18T15:14:51+05:30 Update changelog - - - - - 4 changed files: - debian/changelog - + debian/patches/cross.patch - debian/patches/series - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,12 @@ +segemehl (0.3.4-3) unstable; urgency=medium + + * Team Upload. + * Do not hardcode pkg-config to fix + non cross-buildability + * d/u/metadata: Update URLs + + -- Nilesh Patra <[email protected]> Thu, 18 Feb 2021 15:14:26 +0530 + segemehl (0.3.4-2) unstable; urgency=medium * Fix typo in long description ===================================== debian/patches/cross.patch ===================================== @@ -0,0 +1,20 @@ +Description: Do not hardcode pkg-config to make package cross-buildable +Author: Nilesh Patra <[email protected]> +Last-Update: 2021-02-18 +--- a/Makefile ++++ b/Makefile +@@ -1,11 +1,12 @@ + CC?=gcc + LD=${CC} ++PKG_CONFIG ?= pkg-config + CFLAGS += -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools +-CFLAGS += `pkg-config --cflags htslib` ++CFLAGS += `$(PKG_CONFIG) --cflags htslib` + INC := -I include + CTAGS = ctags > tags + LIB += -lm -lpthread -lz -lncurses -L libs -lform -lmenu -L/usr/local/lib/ +-LIB += `pkg-config --libs htslib` ++LIB += `$(PKG_CONFIG) --libs htslib` + + + PRGTARGETS := segemehl haarz ===================================== debian/patches/series ===================================== @@ -1 +1,2 @@ rpath.patch +cross.patch ===================================== debian/upstream/metadata ===================================== @@ -12,9 +12,9 @@ Reference: Pages: e1000502 DOI: 10.1371/journal.pcbi.1000502 PMID: 19750212 - URL: "http://journals.plos.org/ploscompbiol/article?id=\ + URL: "https://journals.plos.org/ploscompbiol/article?id=\ 10.1371/journal.pcbi.1000502" - eprint: "http://journals.plos.org/ploscompbiol/article/asset?id=\ + eprint: "https://journals.plos.org/ploscompbiol/article/asset?id=\ 10.1371%2Fjournal.pcbi.1000502.PDF" - Author: > Steve Hoffmann and Christian Otto and Gero Doose and Andrea Tanzer and @@ -42,9 +42,9 @@ Reference: Pages: 1698-704 DOI: 10.1093/bioinformatics/bts254 PMID: 22581174 - URL: http://bioinformatics.oxfordjournals.org/content/28/13/1698 + URL: https://academic.oup.com/bioinformatics/article/28/13/1698/235152 eprint: > - http://bioinformatics.oxfordjournals.org/content/28/13/1698.full.pdf+html + https://academic.oup.com/bioinformatics/article-pdf/28/13/1698/641879/bts254.pdf Registry: - Name: OMICtools Entry: OMICS_00683 View it on GitLab: https://salsa.debian.org/med-team/segemehl/-/compare/30fdb1b972aa2f8dd1f2725209da124b99e3a57a...2835fcd8e601071f5e3d3a4abac7af5fae357c29 -- View it on GitLab: https://salsa.debian.org/med-team/segemehl/-/compare/30fdb1b972aa2f8dd1f2725209da124b99e3a57a...2835fcd8e601071f5e3d3a4abac7af5fae357c29 You're receiving this email because of your account on salsa.debian.org.
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