Michael R. Crusoe pushed to branch master at Debian Med / trinityrnaseq
Commits: f1fe3840 by Michael R. Crusoe at 2021-01-19T07:34:05+01:00 Add patch to remove m64 flag. Hopefully helps arm64 to compile. - - - - - 3 changed files: - debian/changelog - debian/patches/series - + debian/patches/strip_m64 Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,9 @@ +trinityrnaseq (2.11.0+dfsg-4) unstable; urgency=medium + + * Add patch to remove m64 flag. Hopefully helps arm64 to compile. + + -- Michael R. Crusoe <[email protected]> Tue, 19 Jan 2021 07:33:58 +0100 + trinityrnaseq (2.11.0+dfsg-3) unstable; urgency=medium * debian/tests/control: adjust so that the tests don't have to pass on archs ===================================== debian/patches/series ===================================== @@ -20,3 +20,4 @@ skip_blat fix-gcc-10.patch bamsifter_build skip_DTU_STAR_test +strip_m64 ===================================== debian/patches/strip_m64 ===================================== @@ -0,0 +1,24 @@ +From: Michael R. Crusoe <[email protected]> +Subject: remove -m64 flag, hopefully helps arm64 compile +--- trinityrnaseq.orig/Chrysalis/CMakeLists.txt ++++ trinityrnaseq/Chrysalis/CMakeLists.txt +@@ -13,7 +13,7 @@ + set(CMAKE_BUILD_TYPE "${default_build_type}") + endif() + +-set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pipe -W -Wall -Wpedantic -fopenmp -pthread -m64") ++set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pipe -W -Wall -Wpedantic -fopenmp -pthread") + + set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -O2 -DNDEBUG ") + set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -g -O0") +--- trinityrnaseq.orig/Inchworm/CMakeLists.txt ++++ trinityrnaseq/Inchworm/CMakeLists.txt +@@ -13,7 +13,7 @@ + set(CMAKE_BUILD_TYPE "${default_build_type}") + endif() + +-set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pipe -W -Wall -Wpedantic -fopenmp -m64") ++set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -pipe -W -Wall -Wpedantic -fopenmp") + + set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -O2 -DNDEBUG ") + set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -g -O0") View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/commit/f1fe384018753aa43e02f91a259303ea4e994f4e -- View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/commit/f1fe384018753aa43e02f91a259303ea4e994f4e You're receiving this email because of your account on salsa.debian.org.
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