Nilesh Patra pushed to branch upstream at Debian Med / cat-bat
Commits:
1d16ff78 by Nilesh Patra at 2021-01-10T20:07:05+05:30
New upstream version 5.2.1
- - - - -
4 changed files:
- CAT_pack/about.py
- CAT_pack/prepare.py
- CHANGELOG.md
- README.md
Changes:
=====================================
CAT_pack/about.py
=====================================
@@ -1,5 +1,5 @@
#!/usr/bin/env python3
__author__ = 'F. A. Bastiaan von Meijenfeldt'
-__version__ = '5.2'
-__date__ = '20 November, 2020'
+__version__ = '5.2.1'
+__date__ = '6 January, 2021'
=====================================
CAT_pack/prepare.py
=====================================
@@ -135,8 +135,8 @@ def memory_bottleneck(args):
(total_memory, error) = check.check_memory(args.min_mem)
if error:
message = (
- 'at least {0:,d}GB of memory is needed for the database '
- 'construction. {1:,d}GB is found on your system. You can try '
+ 'at least {0}GB of memory is needed for the database '
+ 'construction. {1}GB is found on your system. You can try '
'to find a machine with more memory, or download '
'preconstructed database files from '
'tbb.bio.uu.nl/bastiaan/CAT_prepare/.'.format(
=====================================
CHANGELOG.md
=====================================
@@ -1,5 +1,8 @@
# Changelog
+## 5.2.1
+Minor bug fix for `CAT prepare`.
+
## 5.2
`CAT prepare` now uses the latest taxonomy mapping files from NCBI,
significantly expanding taxonomic coverage of proteins in nr. File integrity of
downloads is assessed based on md5 checksums. The ORF2LCA output file contains
a new column for the number of hits the classification is based on. We have
made textual changes to the output files to better reflect the meaning of
'classified' and 'not classified' in different contexts.
=====================================
README.md
=====================================
@@ -19,11 +19,11 @@ A paper describing the algorithm together with extensive
benchmarks can be found
## Dependencies and where to get them
-Python 3, https://www.python.org/ (tested on version 3.5.2)
+Python 3, https://www.python.org/.
-DIAMOND, https://github.com/bbuchfink/diamond (tested on version 0.9.14)
+DIAMOND, https://github.com/bbuchfink/diamond.
-Prodigal, https://github.com/hyattpd/Prodigal (tested on version 2.6.3)
+Prodigal, https://github.com/hyattpd/Prodigal.
CAT and BAT have been thoroughly tested on Linux systems, and should run on
macOS as well.
View it on GitLab:
https://salsa.debian.org/med-team/cat-bat/-/commit/1d16ff784a8fcb96019dfd0a444f1372cec370af
--
View it on GitLab:
https://salsa.debian.org/med-team/cat-bat/-/commit/1d16ff784a8fcb96019dfd0a444f1372cec370af
You're receiving this email because of your account on salsa.debian.org.
_______________________________________________
debian-med-commit mailing list
[email protected]
https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
