Nilesh Patra pushed to branch master at Debian Med / cat-bat
Commits:
0980b284 by Nilesh Patra at 2021-01-10T20:07:04+05:30
routine-update: New upstream version
- - - - -
1d16ff78 by Nilesh Patra at 2021-01-10T20:07:05+05:30
New upstream version 5.2.1
- - - - -
8efef83c by Nilesh Patra at 2021-01-10T20:07:06+05:30
Update upstream source from tag 'upstream/5.2.1'
Update to upstream version '5.2.1'
with Debian dir 989d050df8cf6f4279da1930c2769cd8533b28c2
- - - - -
efce185c by Nilesh Patra at 2021-01-10T20:07:21+05:30
routine-update: Ready to upload to unstable
- - - - -
5 changed files:
- CAT_pack/about.py
- CAT_pack/prepare.py
- CHANGELOG.md
- README.md
- debian/changelog
Changes:
=====================================
CAT_pack/about.py
=====================================
@@ -1,5 +1,5 @@
#!/usr/bin/env python3
__author__ = 'F. A. Bastiaan von Meijenfeldt'
-__version__ = '5.2'
-__date__ = '20 November, 2020'
+__version__ = '5.2.1'
+__date__ = '6 January, 2021'
=====================================
CAT_pack/prepare.py
=====================================
@@ -135,8 +135,8 @@ def memory_bottleneck(args):
(total_memory, error) = check.check_memory(args.min_mem)
if error:
message = (
- 'at least {0:,d}GB of memory is needed for the database '
- 'construction. {1:,d}GB is found on your system. You can try '
+ 'at least {0}GB of memory is needed for the database '
+ 'construction. {1}GB is found on your system. You can try '
'to find a machine with more memory, or download '
'preconstructed database files from '
'tbb.bio.uu.nl/bastiaan/CAT_prepare/.'.format(
=====================================
CHANGELOG.md
=====================================
@@ -1,5 +1,8 @@
# Changelog
+## 5.2.1
+Minor bug fix for `CAT prepare`.
+
## 5.2
`CAT prepare` now uses the latest taxonomy mapping files from NCBI,
significantly expanding taxonomic coverage of proteins in nr. File integrity of
downloads is assessed based on md5 checksums. The ORF2LCA output file contains
a new column for the number of hits the classification is based on. We have
made textual changes to the output files to better reflect the meaning of
'classified' and 'not classified' in different contexts.
=====================================
README.md
=====================================
@@ -19,11 +19,11 @@ A paper describing the algorithm together with extensive
benchmarks can be found
## Dependencies and where to get them
-Python 3, https://www.python.org/ (tested on version 3.5.2)
+Python 3, https://www.python.org/.
-DIAMOND, https://github.com/bbuchfink/diamond (tested on version 0.9.14)
+DIAMOND, https://github.com/bbuchfink/diamond.
-Prodigal, https://github.com/hyattpd/Prodigal (tested on version 2.6.3)
+Prodigal, https://github.com/hyattpd/Prodigal.
CAT and BAT have been thoroughly tested on Linux systems, and should run on
macOS as well.
=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+cat-bat (5.2.1-1) unstable; urgency=medium
+
+ * New upstream version
+
+ -- Nilesh Patra <[email protected]> Sun, 10 Jan 2021 20:07:21 +0530
+
cat-bat (5.2-1) unstable; urgency=medium
* New upstream version
View it on GitLab:
https://salsa.debian.org/med-team/cat-bat/-/compare/db36fc38e711c5cfeb0e217253368f7d9d0b4b29...efce185c1d7107de9f4520fb75cb670a331dee6c
--
View it on GitLab:
https://salsa.debian.org/med-team/cat-bat/-/compare/db36fc38e711c5cfeb0e217253368f7d9d0b4b29...efce185c1d7107de9f4520fb75cb670a331dee6c
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