Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
2aaedd29 by Andreas Tille at 2021-01-03T13:45:56+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,25 +1,25 @@
-Last-Update: Sun, 03 Jan 2021 01:42:03 +0000
+Last-Update: Sun, 03 Jan 2021 13:42:03 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 187 | {covid-19,imaging}
|
- orthanc | 96 | {imaging,covid-19,practice}
|
+ dcmtk | 186 | {covid-19,imaging}
|
+ orthanc | 97 | {imaging,covid-19,practice}
|
orthanc-wsi | 52 |
{his,covid-19,imaging,practice,laboratory,oncology} |
gdcm | 42 | {imaging-dev}
|
- amide | 35 | {imaging}
|
- dicomscope | 29 | {imaging}
|
+ amide | 33 | {imaging}
|
+ dicomscope | 30 | {imaging}
|
dicom3tools | 28 | {imaging}
|
- htsjdk | 24 | {bio-dev}
|
+ htsjdk | 25 | {bio-dev}
|
dcm2niix | 21 | {imaging}
|
invesalius | 19 | {imaging}
|
nifticlib | 19 | {imaging}
|
gnumed-server | 18 | {covid-19,practice}
|
odin | 18 | {imaging-dev,imaging}
|
dicomnifti | 16 | {imaging}
|
- gdcm | 16 | {imaging-dev}
|
- gdcm | 16 | {covid-19,imaging}
|
+ gdcm | 15 | {covid-19,imaging}
|
king | 15 | {imaging,typesetting}
|
minc-tools | 15 | {imaging}
|
+ gdcm | 14 | {imaging-dev}
|
plastimatch | 14 | {imaging}
|
mia | 13 | {imaging}
|
ngs-sdk | 13 | {bio-dev}
|
@@ -45,23 +45,22 @@ Last-Update: Sun, 03 Jan 2021 01:42:03 +0000
treeview | 7 | {bio,bio-phylogeny}
|
bamkit | 6 | {bio,covid-19}
|
biojava-live | 6 | {bio-dev}
|
- biomaj3-daemon | 6 | {bio}
|
busco | 6 | {bio,covid-19}
|
- mipe | 6 | {bio,cloud}
|
+ ngs-sdk | 6 | {bio-dev}
|
orthanc-dicomweb | 6 | {imaging,covid-19}
|
orthanc-postgresql | 6 | {imaging}
|
prime-phylo | 6 | {bio,cloud}
|
rambo-k | 6 | {bio}
|
bart-view | 5 | {imaging}
|
beast-mcmc | 5 | {bio-phylogeny,bio}
|
- biomaj3-cli | 5 | {cloud}
|
+ biomaj3-daemon | 5 | {bio}
|
bitseq | 5 | {bio}
|
canu | 5 | {bio}
|
embassy-domsearch | 5 | {bio,cloud}
|
jebl2 | 5 | {bio-dev}
|
jellyfish1 | 5 | {bio}
|
libminc | 5 | {imaging-dev}
|
- ngs-sdk | 5 | {bio-dev}
|
+ mipe | 5 | {bio,cloud}
|
nifti2dicom | 5 | {imaging}
|
orthanc-mysql | 5 | {imaging}
|
phast | 5 | {bio}
|
@@ -72,16 +71,15 @@ Last-Update: Sun, 03 Jan 2021 01:42:03 +0000
pscan-chip | 5 | {bio}
|
rdp-alignment | 5 | {bio}
|
seqsero | 5 | {bio}
|
- anfo | 4 | {cloud,bio}
|
arden | 4 | {cloud,bio}
|
assemblytics | 4 | {bio}
|
+ biomaj3-cli | 4 | {cloud}
|
embassy-domalign | 4 | {bio,cloud}
|
ghmm | 4 | {bio}
|
ipig | 4 | {bio}
|
lamarc | 4 | {bio}
|
libncl | 4 | {bio}
|
librdp-taxonomy-tree-java | 4 | {bio-dev}
|
- mhap | 4 | {bio-ngs,bio}
|
piler | 4 | {bio}
|
quorum | 4 | {bio}
|
rdp-classifier | 4 | {bio}
|
@@ -90,8 +88,10 @@ Last-Update: Sun, 03 Jan 2021 01:42:03 +0000
samblaster | 4 | {bio,covid-19}
|
sibsim4 | 4 | {bio,cloud}
|
spread-phy | 4 | {bio,bio-phylogeny}
|
+ stacks | 4 | {bio}
|
staden | 4 | {bio}
|
zalign | 4 | {bio,cloud}
|
+ anfo | 3 | {cloud,bio}
|
blasr | 3 | {bio,bio-ngs}
|
clonalframeml | 3 | {bio,covid-19}
|
clonalorigin | 3 | {bio}
|
@@ -105,17 +105,18 @@ Last-Update: Sun, 03 Jan 2021 01:42:03 +0000
libdivsufsort | 3 | {bio-dev}
|
libpal-java | 3 | {bio-dev}
|
mauve-aligner | 3 | {bio}
|
+ mhap | 3 | {bio-ngs,bio}
|
paraclu | 3 | {cloud,bio}
|
pbdagcon | 3 | {bio}
|
prottest | 3 | {bio,bio-phylogeny}
|
qcumber | 3 | {bio}
|
rtax | 3 | {bio,cloud}
|
+ salmid | 3 | {bio}
|
sga | 3 | {bio}
|
soapaligner | 3 | {bio}
|
soapsnp | 3 | {bio}
|
spaced | 3 | {bio}
|
sprai | 3 | {bio}
|
- stacks | 3 | {bio}
|
blimps | 2 | {bio}
|
brig | 2 | {bio}
|
dindel | 2 | {bio}
|
@@ -132,7 +133,6 @@ Last-Update: Sun, 03 Jan 2021 01:42:03 +0000
opencfu | 2 | {laboratory}
|
perm | 2 | {cloud,bio}
|
plasmidseeker | 2 | {bio}
|
- salmid | 2 | {bio}
|
salmon | 2 | {covid-19,bio}
|
segemehl | 2 | {bio}
|
sift | 2 | {bio}
|
@@ -169,9 +169,9 @@ Last-Update: Sun, 03 Jan 2021 01:42:03 +0000
bambamc | 0 | {bio-dev}
|
bbmap | 0 | {bio,covid-19}
|
biojava4-live | 0 | {bio-dev}
|
- biosig | 0 | {physics,imaging-dev}
|
- biosig | 0 | {imaging-dev,physics}
|
biosig | 0 | {physics}
|
+ biosig | 0 | {imaging-dev,physics}
|
+ biosig | 0 | {physics,imaging-dev}
|
biosyntax | 0 | {bio}
|
bmtk | 0 | {psychology}
|
camp | 0 | {imaging-dev}
|
@@ -225,8 +225,8 @@ Last-Update: Sun, 03 Jan 2021 01:42:03 +0000
pique | 0 | {bio}
|
pplacer | 0 | {covid-19,bio,bio-phylogeny}
|
python-bcbio-gff | 0 | {bio-dev}
|
- python-seqcluster | 0 | {bio}
|
python-seqcluster | 0 | {covid-19,bio-dev}
|
+ python-seqcluster | 0 | {bio}
|
q2-sample-classifier | 0 | {bio,bio-dev}
|
resfinder-db | 0 | {bio}
|
sambamba | 0 | {bio}
|
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2aaedd29073ffd600aeaf251452317989365c59b
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/2aaedd29073ffd600aeaf251452317989365c59b
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