Steffen Möller pushed to branch master at Debian Med / mosdepth
Commits:
659afae8 by Steffen Moeller at 2020-11-03T22:49:40+01:00
Extended clean
- - - - -
fcfafa5f by Steffen Moeller at 2020-11-03T22:53:18+01:00
Avoid redundant tests/missing.bed
Changes not staged for commit:
(use "git add/rm <file>..." to update what will be committed)
(use "git restore <file>..." to discard changes in working
directory)
deleted: tests/missing.bed
This somehow gets removed during build.
- - - - -
ab04e61a by Steffen Moeller at 2020-11-04T14:35:17+01:00
Respecting request not to test
- - - - -
2 changed files:
- debian/copyright
- debian/rules
Changes:
=====================================
debian/copyright
=====================================
@@ -1,7 +1,9 @@
Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: mosdepth
Source: https://github.com/brentp/mosdepth
-Files-Excluded: tests/*.bam*
+Files-Excluded:
+ tests/*.bam*
+ tests/missing.bed
Files: *
Copyright: 2017-2020 Brent Pedersen
=====================================
debian/rules
=====================================
@@ -15,6 +15,7 @@ override_dh_auto_build:
help2man --no-info --no-discard-stderr --help-option="-h" ./mosdepth >
debian/mosdepth.1
override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
rm -f tests/missing.bed
for f in debian/missing-sources/*; do \
outp=tests/`echo $$f | sed -e 's/sam/bam/' -e
's/debian\/missing\-sources\///'` ; \
@@ -26,7 +27,11 @@ override_dh_auto_test:
samtools index $$outp ; \
done
dh_auto_test
+endif
override_dh_auto_clean:
rm -f debian/mosdepth.1
rm -f mosdepth
+ rm -rf tests/nimcache
+ rm -f tests/big.bam.csi
+ rm -f tests/ovl.bam tests/ovl.bam.bai tests/overlapping-pairs.bam.bai
tests/overlapping-pairs.bam tests/overlapping-pairs.bam
tests/empty-tids.bam.bai tests/empty-tids.bam tests/big.bam tests/nanopore.bam
tests/nanopore.bam.bai
View it on GitLab:
https://salsa.debian.org/med-team/mosdepth/-/compare/99e8a677590be26e0cf35c6edae5205baee9c0c1...ab04e61aa21d591d5255ef9a381a590e80f42b7c
--
View it on GitLab:
https://salsa.debian.org/med-team/mosdepth/-/compare/99e8a677590be26e0cf35c6edae5205baee9c0c1...ab04e61aa21d591d5255ef9a381a590e80f42b7c
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