Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
48a478b1 by Andreas Tille at 2020-10-21T13:46:05+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,35 +1,35 @@
-Last-Update: Wed, 21 Oct 2020 01:42:03 +0000
+Last-Update: Wed, 21 Oct 2020 13:42:03 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 176 | {covid-19,imaging}
|
- orthanc | 95 | {practice,imaging,covid-19}
|
- orthanc-wsi | 48 |
{practice,covid-19,his,oncology,imaging,laboratory} |
+ dcmtk | 175 | {covid-19,imaging}
|
+ orthanc | 94 | {practice,imaging,covid-19}
|
+ orthanc-wsi | 47 |
{practice,covid-19,his,oncology,imaging,laboratory} |
gdcm | 40 | {imaging-dev}
|
- dicom3tools | 32 | {imaging}
|
- dicomscope | 29 | {imaging}
|
- htsjdk | 28 | {bio-dev}
|
+ dicom3tools | 33 | {imaging}
|
+ htsjdk | 31 | {bio-dev}
|
+ dicomscope | 30 | {imaging}
|
dcm2niix | 20 | {imaging}
|
- gdcm | 20 | {imaging,covid-19}
|
+ gdcm | 19 | {imaging,covid-19}
|
gnumed-server | 18 | {practice,covid-19}
|
+ ngs-sdk | 17 | {bio-dev}
|
gdcm | 16 | {imaging-dev}
|
- ngs-sdk | 16 | {bio-dev}
|
invesalius | 14 | {imaging}
|
minc-tools | 14 | {imaging}
|
biosig | 13 | {imaging,physics}
|
- pixelmed | 13 | {imaging}
|
+ nifticlib | 13 | {imaging}
|
nifticlib | 12 | {imaging-dev}
|
- nifticlib | 12 | {imaging}
|
+ pixelmed | 12 | {imaging}
|
+ ngs-sdk | 11 | {bio-dev}
|
+ vtk-dicom | 11 | {imaging}
|
adun.app | 10 | {bio}
|
insighttoolkit4 | 10 | {imaging-dev}
|
- ngs-sdk | 10 | {bio-dev}
|
plastimatch | 10 | {imaging}
|
- vtk-dicom | 10 | {imaging}
|
+ king | 9 | {imaging,typesetting}
|
openslide | 9 | {imaging}
|
- king | 8 | {imaging,typesetting}
|
+ librg-utils-perl | 8 | {bio}
|
obitools | 8 | {bio}
|
dicompyler | 7 | {oncology}
|
- librg-utils-perl | 7 | {bio}
|
melting | 7 | {bio,cloud}
|
orthanc-webviewer | 7 | {imaging}
|
bart-view | 6 | {imaging}
|
@@ -37,28 +37,30 @@ Last-Update: Wed, 21 Oct 2020 01:42:03 +0000
multiqc | 6 | {covid-19,bio}
|
biojava-live | 5 | {bio-dev}
|
biomaj3-cli | 5 | {cloud}
|
- elastix | 5 | {imaging}
|
jebl2 | 5 | {bio-dev}
|
libdivsufsort | 5 | {bio-dev}
|
libsbml | 5 | {bio-dev}
|
orthanc-dicomweb | 5 | {covid-19,imaging}
|
+ predictprotein | 5 | {bio}
|
pymia | 5 | {imaging-dev}
|
salmon | 5 | {bio,covid-19}
|
stacks | 5 | {bio}
|
staden | 5 | {bio}
|
anfo | 4 | {bio,cloud}
|
+ elastix | 4 | {imaging}
|
fastlink | 4 | {cloud,bio}
|
lagan | 4 | {bio}
|
libminc | 4 | {imaging-dev}
|
mipe | 4 | {cloud,bio}
|
- phyutility | 4 | {cloud,bio}
|
- predictprotein | 4 | {bio}
|
+ rambo-k | 4 | {bio}
|
seqsero | 4 | {bio}
|
sibsim4 | 4 | {bio,cloud}
|
alter-sequence-alignment | 3 | {bio}
|
assemblytics | 3 | {bio}
|
+ bamkit | 3 | {covid-19,bio}
|
beast-mcmc | 3 | {bio-phylogeny,bio}
|
biomaj3-daemon | 3 | {bio}
|
+ bio-tradis | 3 | {bio-dev,bio}
|
brig | 3 | {bio}
|
clonalorigin | 3 | {bio}
|
delly | 3 | {covid-19,bio}
|
@@ -70,16 +72,18 @@ Last-Update: Wed, 21 Oct 2020 01:42:03 +0000
ghmm | 3 | {bio}
|
jellyfish1 | 3 | {bio}
|
libncl | 3 | {bio}
|
+ mhap | 3 | {bio,bio-ngs}
|
mrs | 3 | {bio}
|
+ ngs-sdk | 3 | {bio-dev}
|
nutsqlite | 3 | {tools}
|
orthanc-postgresql | 3 | {imaging}
|
papyrus | 3 | {imaging-dev}
|
phast | 3 | {bio}
|
+ phyutility | 3 | {cloud,bio}
|
piler | 3 | {bio}
|
placnet | 3 | {bio}
|
prime-phylo | 3 | {cloud,bio}
|
radiant | 3 | {bio}
|
- rambo-k | 3 | {bio}
|
sight | 3 | {imaging}
|
soapsnp | 3 | {bio}
|
spread-phy | 3 | {bio,bio-phylogeny}
|
@@ -88,8 +92,6 @@ Last-Update: Wed, 21 Oct 2020 01:42:03 +0000
yaha | 3 | {bio}
|
acedb | 2 | {bio,cloud}
|
arden | 2 | {bio,cloud}
|
- bamkit | 2 | {covid-19,bio}
|
- bio-tradis | 2 | {bio-dev,bio}
|
bitseq | 2 | {bio}
|
busco | 2 | {bio,covid-19}
|
clonalframeml | 2 | {covid-19,bio}
|
@@ -101,10 +103,8 @@ Last-Update: Wed, 21 Oct 2020 01:42:03 +0000
hinge | 2 | {bio}
|
lamarc | 2 | {bio}
|
mauve-aligner | 2 | {bio}
|
- mhap | 2 | {bio,bio-ngs}
|
microbegps | 2 | {bio}
|
murasaki | 2 | {bio}
|
- openslide | 2 | {imaging-dev}
|
orthanc-mysql | 2 | {imaging}
|
oscar | 2 | {data,practice,tools}
|
paraclu | 2 | {cloud,bio}
|
@@ -140,6 +140,7 @@ Last-Update: Wed, 21 Oct 2020 01:42:03 +0000
ipig | 1 | {bio}
|
jmodeltest | 1 | {bio,bio-phylogeny}
|
kmerresistance | 1 | {bio}
|
+ libbio-mage-utils-perl | 1 | {bio-dev}
|
libctapimkt | 1 | {practice}
|
libmaus2 | 1 | {bio-dev,covid-19}
|
libpal-java | 1 | {bio-dev}
|
@@ -149,7 +150,7 @@ Last-Update: Wed, 21 Oct 2020 01:42:03 +0000
metaphlan2 | 1 | {bio}
|
ncbi-vdb | 1 | {bio-dev}
|
neobio | 1 | {bio,cloud}
|
- ngs-sdk | 1 | {bio-dev}
|
+ openslide | 1 | {imaging-dev}
|
opensurgsim | 1 | {imaging-dev}
|
pbcopper | 1 | {bio-dev}
|
pbdagcon | 1 | {bio}
|
@@ -185,7 +186,6 @@ Last-Update: Wed, 21 Oct 2020 01:42:03 +0000
intake | 0 | {bio,bio-dev}
|
libbigwig | 0 | {bio-dev}
|
libbiod | 0 | {bio-dev}
|
- libbio-mage-utils-perl | 0 | {bio-dev}
|
libbioparser-dev | 0 | {bio-dev}
|
libbpp-core | 0 | {bio-dev}
|
libbpp-phyl | 0 | {bio-dev}
|
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/48a478b1ba08d5f3fe6f8c0314c381bc0bc4c488
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/48a478b1ba08d5f3fe6f8c0314c381bc0bc4c488
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