Shruti Sridhar pushed to branch master at Debian Med / damapper
Commits: 40516f73 by Shruti Sridhar at 2020-08-23T23:50:48+05:30 Add autopkgtest - - - - - 2bd34ee5 by Shruti Sridhar at 2020-08-23T23:54:16+05:30 Install docs - - - - - b32b959e by Shruti Sridhar at 2020-08-23T23:58:39+05:30 Update changelog - - - - - 5 changed files: - + debian/README.test - debian/changelog - + debian/docs - + debian/tests/control - + debian/tests/run-unit-test Changes: ===================================== debian/README.test ===================================== @@ -0,0 +1,8 @@ +Notes on how this package can be tested. +──────────────────────────────────────── + +This package can be tested by running the provided test: + + sh run-unit-test + +in order to confirm its integrity. ===================================== debian/changelog ===================================== @@ -1,3 +1,11 @@ +damapper (0.0+git20200322.b2c9d7f-2) UNRELEASED; urgency=medium + + [ Shruti Sridhar ] + * Add autopkgtest + * Install docs + + -- Shruti Sridhar <[email protected]> Sun, 23 Aug 2020 23:55:32 +0530 + damapper (0.0+git20200322.b2c9d7f-1) unstable; urgency=medium * Initial release (Closes: #968191) ===================================== debian/docs ===================================== @@ -0,0 +1,3 @@ +README.md +debian/README* +debian/tests/run-unit-test \ No newline at end of file ===================================== debian/tests/control ===================================== @@ -0,0 +1,3 @@ +Tests: run-unit-test +Depends: @,dazzdb, daligner +Restrictions: allow-stderr ===================================== debian/tests/run-unit-test ===================================== @@ -0,0 +1,43 @@ +#!/bin/bash +set -e + +pkg=damapper + +export LC_ALL=C.UTF-8 +if [ "${AUTOPKGTEST_TMP}" = "" ] ; then + AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX) + trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM +fi + +#cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}" + +cd "${AUTOPKGTEST_TMP}" + +#do_stuff_to_test_package# +rangen 1.0 -r2020 >R.fasta +fasta2DAM R R.fasta +dsimulator R -c20. -r2020 >G.fasta +fasta2DB G G.fasta + +DBsplit -s11 G +DBdust G.1 +DBdust G.2 + + +rangen 1.0 -r2021 >R1.fasta +fasta2DAM R1 R1.fasta +dsimulator R1 -c20. -r2021 >G1.fasta +fasta2DB G1 G1.fasta + +DBsplit -s11 G1 +DBdust G.1 +DBdust G.2 + + + +HPC.damapper -mdust -t5 G G1 | sh -v + + +# Since the output is not consistent. +#It cannot be compared with the reference. + View it on GitLab: https://salsa.debian.org/med-team/damapper/-/compare/55aca33627cb843c3cea435ccd4e660faed924c7...b32b959e229c816dd929d9779a2ded2a2e94361a -- View it on GitLab: https://salsa.debian.org/med-team/damapper/-/compare/55aca33627cb843c3cea435ccd4e660faed924c7...b32b959e229c816dd929d9779a2ded2a2e94361a You're receiving this email because of your account on salsa.debian.org.
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