Andreas Tille pushed to branch master at Debian Med / hmmer2
Commits: bcb860c8 by Andreas Tille at 2020-08-12T11:43:46+02:00 Do not Build-Depend pvm-dev and disable pvm in configure - - - - - 62f9ffaf by Andreas Tille at 2020-08-12T11:44:16+02:00 routine-update: Standards-Version: 4.5.0 - - - - - b9b90f3b by Andreas Tille at 2020-08-12T11:44:16+02:00 routine-update: debhelper-compat 13 - - - - - 6b2d6de6 by Andreas Tille at 2020-08-12T11:44:20+02:00 routine-update: Remove trailing whitespace in debian/changelog - - - - - da3a236c by Andreas Tille at 2020-08-12T11:44:20+02:00 routine-update: Add salsa-ci file - - - - - 1e863b1c by Andreas Tille at 2020-08-12T11:44:21+02:00 routine-update: Rules-Requires-Root: no - - - - - 2b27b7e0 by Andreas Tille at 2020-08-12T11:44:30+02:00 Set upstream metadata fields: Repository, Repository-Browse. Changes-By: lintian-brush Fixes: lintian: upstream-metadata-missing-repository See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html - - - - - ecdc1857 by Andreas Tille at 2020-08-12T11:44:30+02:00 Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). Changes-By: lintian-brush - - - - - 43194d90 by Andreas Tille at 2020-08-12T11:45:47+02:00 routine-update: Ready to upload to unstable - - - - - 6 changed files: - debian/changelog - − debian/compat - debian/control - debian/rules - + debian/salsa-ci.yml - debian/upstream/metadata Changes: ===================================== debian/changelog ===================================== @@ -1,4 +1,4 @@ -hmmer2 (2.5j+dfsg-1) UNRELEASED; urgency=medium +hmmer2 (2.5j+dfsg-1) unstable; urgency=medium * Development of hmmer2 seems to be continued at Github https://github.com/MichiganTech/hmmer -> point watch file to this @@ -10,8 +10,16 @@ hmmer2 (2.5j+dfsg-1) UNRELEASED; urgency=medium * Drop hmmer2-pvm package * libhmmer2-dev package drops static lib (this is not automatically generated by upstream any more) + * Standards-Version: 4.5.0 (routine-update) + * debhelper-compat 13 (routine-update) + * Remove trailing whitespace in debian/changelog (routine-update) + * Add salsa-ci file (routine-update) + * Rules-Requires-Root: no (routine-update) + * Set upstream metadata fields: Repository, Repository-Browse. + * Remove obsolete field Name from debian/upstream/metadata (already present in + machine-readable debian/copyright). - -- Andreas Tille <[email protected]> Fri, 11 Jan 2019 15:43:07 +0100 + -- Andreas Tille <[email protected]> Wed, 12 Aug 2020 11:44:30 +0200 hmmer2 (2.3.2+dfsg-6) unstable; urgency=medium @@ -136,8 +144,8 @@ hmmer2 (2.3.2-7) unstable; urgency=low - Removed myself from the Uploaders. - Removed obsolete DM-Upload-Allowed field. - Use canonical VCS URLs. - - Normalised using config-model-edit. - - Build-depend on libperl4-corelibs-perl (Closes: #730921). + - Normalised using config-model-edit. + - Build-depend on libperl4-corelibs-perl (Closes: #730921). * Conforms with Policy 3.9.5. -- Charles Plessy <[email protected]> Sun, 01 Dec 2013 09:26:43 +0900 @@ -159,16 +167,16 @@ hmmer2 (2.3.2-6) unstable; urgency=low hmmer (>=3) in wheezy. * Renaming binaries and man pages: - hmmalign => hmm2align - hmmbuild => hmm2build + hmmalign => hmm2align + hmmbuild => hmm2build hmmcalibrate => hmm2calibrate - hmmconvert => hmm2convert - hmmemit => hmm2emit - hmmfetch => hmm2fetch - hmmindex => hmm2index - hmmpfam => hmm2pfam - hmmsearch => hmm2search - + hmmconvert => hmm2convert + hmmemit => hmm2emit + hmmfetch => hmm2fetch + hmmindex => hmm2index + hmmpfam => hmm2pfam + hmmsearch => hmm2search + hmmcalibrate-pvm => hmm2calibrate-pvm hmmpfam-pvm => hmm2pfam-pvm hmmsearch-pvm => hmm2search-pvm @@ -255,7 +263,7 @@ hmmer (2.1.3) unstable; urgency=low * Move from /usr/doc to /usr/share/doc (closes: #91494) -- Matthew Vernon <[email protected]> Mon, 09 Apr 2001 16:12:21 +0100 - + hmmer (2.1.2) unstable; urgency=low * New maintainer ===================================== debian/compat deleted ===================================== @@ -1 +0,0 @@ -12 ===================================== debian/control ===================================== @@ -4,17 +4,17 @@ Uploaders: Andreas Tille <[email protected]>, Laszlo Kajan <[email protected]> Section: science Priority: optional -Build-Depends: debhelper (>= 12~), - pvm-dev, +Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename -Standards-Version: 4.3.0 +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/hmmer2 Vcs-Git: https://salsa.debian.org/med-team/hmmer2.git Homepage: http://hmmer.janelia.org/ +Rules-Requires-Root: no Package: hmmer2 Architecture: any ===================================== debian/rules ===================================== @@ -13,7 +13,7 @@ sampledir:=$(CURDIR)/debian/$(pkgdata)/usr/share/doc/$(pkgdata)/examples dh $@ override_dh_auto_configure: - dh_auto_configure -- --enable-threads --enable-lfs --enable-pvm + dh_auto_configure -- --enable-threads --enable-lfs # --enable-pvm # avoid duplicated definition of PACKAGE_NAME (basically conflicting with biosquid when used together) sed -i -e '/^#define PACKAGE_NAME /i #ifndef PACKAGE_NAME' \ -e '/^#define PACKAGE_NAME /a #endif' \ ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/upstream/metadata ===================================== @@ -1,5 +1,4 @@ Contact: http://selab.janelia.org/people/eddys/contact.html -Name: HMMER Reference: Author: Eddy, Sean R. Title: Profile hidden Markov models @@ -20,3 +19,5 @@ Registry: Entry: hmmer2 - Name: conda:bioconda Entry: hmmer2 +Repository: https://github.com/MichiganTech/hmmer.git +Repository-Browse: https://github.com/MichiganTech/hmmer View it on GitLab: https://salsa.debian.org/med-team/hmmer2/-/compare/795e6a04a8d4663298a2ed85e6a7404088bb1c0c...43194d908114dc7f1ec1dbeb6877d05ea10cdc6d -- View it on GitLab: https://salsa.debian.org/med-team/hmmer2/-/compare/795e6a04a8d4663298a2ed85e6a7404088bb1c0c...43194d908114dc7f1ec1dbeb6877d05ea10cdc6d You're receiving this email because of your account on salsa.debian.org.
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