gleisson joaquim pushed to branch master at Debian Med / parsinsert
Commits: 117a55df by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T15:32:09-03:00 New changelog - - - - - 7523ed95 by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T15:35:30-03:00 Bumped Std-Vrs to 4.5.0 - - - - - f0c94918 by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T15:42:28-03:00 Added Rules-Requires-Root - - - - - 713ba457 by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T15:44:38-03:00 Run wrap-and-sort - - - - - b8b4ef26 by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T18:58:15-03:00 Bumped DH to 13 - - - - - 94dd8903 by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T19:17:46-03:00 Added DEP12 upstream metadata - - - - - e09bf9ab by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T19:28:30-03:00 Renamed all patches - - - - - 84c7ba1c by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T19:35:15-03:00 (010) Added Last-Update field to header - - - - - 1ff9a68a by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T19:39:09-03:00 Refreshed patches - - - - - 393286a3 by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T20:25:14-03:00 Fowarded all patches to upstream - - - - - 4c0ad37e by Gleisson Jesuino Joaquim Cardoso at 2020-08-04T20:32:50-03:00 Overrinding lintian about manpage - - - - - 9ec19dda by Gleisson Jesuino Joaquim Cardoso at 2020-08-05T10:35:53-03:00 Fix duplicate files with same contents - - - - - 34f83663 by Gleisson Jesuino Joaquim Cardoso at 2020-08-05T10:38:15-03:00 Improved watch - - - - - 0876de0c by Gleisson Jesuino Joaquim Cardoso at 2020-08-05T10:43:08-03:00 Added salsa-ci.yml - - - - - 4b3f25ee by Gleisson Jesuino Joaquim Cardoso at 2020-08-05T10:44:39-03:00 New version 1.04-8 - - - - - 11 changed files: - debian/changelog - debian/control - debian/copyright - debian/patches/fix-gcc6.patch → debian/patches/010_fix-gcc6.patch - debian/patches/hardening.patch → debian/patches/020_hardening.patch - debian/patches/series - debian/rules - + debian/salsa-ci.yml - + debian/source/lintian-overrides - debian/upstream/metadata - debian/watch Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,29 @@ +parsinsert (1.04-8) UNRELEASED; urgency=medium + + * Run wrap-and-sort. + * debian/control: + - Added 'Rules-Requires-Root: no' to source stanza. + - Bumped debhelper-compat to 13. + - Bumped Standards-Version to 4.5.0. + * debian/patches: + - All patches forwarded upstream. + - Refreshed all patches. + - Renamed all patches. + - 010_fix-gcc6.patch: added Last-Update field to header. + * debian/rules: + - Added a override_dh_link using jdupes to replace the result file with + the same content to softlinks. Consequently: + ~ debian/control: added jdupes to Build-Depends field. + * debian/salsa-ci.yml: added to provide CI tests for Salsa. + * debian/source/lintian-overrides: created to override a message about + manpage, as requested by lintian. + * debian/upstream/metadata: added DEP-12 upstream metadata fields. + * debian/watch:$ + - Bumped version to 4.$ + - Used special strings instead of regex to improve the search. + + -- Gleisson Jesuino Joaquim Cardoso <[email protected]> Wed, 05 Aug 2020 10:43:49 -0300 + parsinsert (1.04-7) unstable; urgency=medium [ Chris Lamb ] ===================================== debian/control ===================================== @@ -1,19 +1,18 @@ Source: parsinsert Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Tim Booth <[email protected]>, - Andreas Tille <[email protected]> +Uploaders: Tim Booth <[email protected]>, Andreas Tille <[email protected]> Section: science Priority: optional -Build-Depends: debhelper-compat (= 12) -Standards-Version: 4.4.1 +Build-Depends: debhelper-compat (= 13), jdupes +Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/parsinsert Vcs-Git: https://salsa.debian.org/med-team/parsinsert.git Homepage: http://sourceforge.net/projects/parsinsert/ +Rules-Requires-Root: no Package: parsinsert Architecture: any -Depends: ${shlibs:Depends}, - ${misc:Depends} +Depends: ${misc:Depends}, ${shlibs:Depends} Suggests: parsinsert-testdata Description: Parsimonious Insertion of unclassified sequences into phylogenetic trees ParsInsert efficiently produces both a phylogenetic tree and taxonomic ===================================== debian/copyright ===================================== @@ -24,4 +24,3 @@ License: GPL-3+ Files: debian/* Copyright: © 2014 Tim Booth <[email protected]> License: GPL-3+ - ===================================== debian/patches/fix-gcc6.patch → debian/patches/010_fix-gcc6.patch ===================================== @@ -1,9 +1,14 @@ Description: fix building on GCC 6 Use correct initialization for char* array. +Forwarded: https://sourceforge.net/p/parsinsert/bugs/2/ Author: Sascha Steinbiss <[email protected]> ---- a/ParsInsert.cpp -+++ b/ParsInsert.cpp -@@ -95,7 +95,7 @@ +Last-Update: 2016-05-14 + +Index: parsinsert/ParsInsert.cpp +=================================================================== +--- parsinsert.orig/ParsInsert.cpp ++++ parsinsert/ParsInsert.cpp +@@ -95,7 +95,7 @@ char *treeFilename = "P char *seqFilename = "PI_Tree.fasta"; char *fullTreeName = NULL; ===================================== debian/patches/hardening.patch → debian/patches/020_hardening.patch ===================================== @@ -1,9 +1,12 @@ +Description: Propagate hardening options +Forwarded: https://sourceforge.net/p/parsinsert/bugs/3/ Author: Andreas Tille <[email protected]> Last-Update: Thu, 27 Feb 2014 16:50:26 +0000 -Description: Propagate hardening options ---- a/makefile -+++ b/makefile +Index: parsinsert/makefile +=================================================================== +--- parsinsert.orig/makefile ++++ parsinsert/makefile @@ -9,15 +9,15 @@ PROGRAM = ParsInsert OBJECTS = AttrList.o Knox_Stddef.o PNode.o SeqList.o Taxonomy.o ParsInsert.o @@ -23,7 +26,7 @@ Description: Propagate hardening options all: $(PROGRAM) -@@ -26,12 +26,12 @@ +@@ -26,12 +26,12 @@ clean: TEST_OBJECTS = PNode.o AttrList.o Knox_Stddef.o Test.o test: $(TEST_OBJECTS) ===================================== debian/patches/series ===================================== @@ -1,2 +1,2 @@ -hardening.patch -fix-gcc6.patch +010_fix-gcc6.patch +020_hardening.patch ===================================== debian/rules ===================================== @@ -33,3 +33,7 @@ endif override_dh_install: dh_install -Xset1000.log + +override_dh_link: + dh_link + jdupes -rl debian/parsinsert-testdata/usr ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/source/lintian-overrides ===================================== @@ -0,0 +1,4 @@ +# Manpage file was sent to upstream. +# See https://sourceforge.net/p/parsinsert/bugs/4/ +# Overriding as requested by lintian. +parsinsert source: maintainer-manual-page debian/parsinsert.1 ===================================== debian/upstream/metadata ===================================== @@ -6,3 +6,7 @@ Registry: - Name: bio.tools Entry: NA Archive: SourceForge +Bug-Database: https://sourceforge.net/p/parsinsert/bugs/ +Bug-Submit: https://sourceforge.net/p/parsinsert/bugs/new +Repository: https://sourceforge.net/projects/parsinsert/files/latest/download +Repository-Browse: https://sourceforge.net/projects/parsinsert/files/ ===================================== debian/watch ===================================== @@ -1,2 +1,2 @@ -version=3 -https://sf.net/parsinsert/ParsInsert\.([\d\.]+)\.tgz +version=4 +https://sf.net/parsinsert/ ParsInsert.@ANY_VERSION@@ARCHIVE_EXT@ View it on GitLab: https://salsa.debian.org/med-team/parsinsert/-/compare/f431af482e892d321e8f4690bc5eee4eaae2da4a...4b3f25eef373fce896014e177f1baafe1896af37 -- View it on GitLab: https://salsa.debian.org/med-team/parsinsert/-/compare/f431af482e892d321e8f4690bc5eee4eaae2da4a...4b3f25eef373fce896014e177f1baafe1896af37 You're receiving this email because of your account on salsa.debian.org.
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