Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
d307334b by Andreas Tille at 2020-07-30T13:44:43+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,38 +1,37 @@
-Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
+Last-Update: Thu, 30 Jul 2020 13:42:04 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 173 | {imaging,covid-19}
|
- orthanc | 92 | {practice,covid-19,imaging}
|
+ dcmtk | 169 | {imaging,covid-19}
|
+ orthanc | 90 | {practice,covid-19,imaging}
|
orthanc-wsi | 44 |
{his,laboratory,covid-19,imaging,practice,oncology} |
- gdcm | 34 | {imaging-dev}
|
+ gdcm | 37 | {imaging-dev}
|
htsjdk | 26 | {bio-dev}
|
dicom3tools | 23 | {imaging}
|
- dicomscope | 20 | {imaging}
|
dcm2niix | 19 | {imaging}
|
+ dicomscope | 19 | {imaging}
|
gnumed-server | 18 | {covid-19,practice}
|
gdcm | 16 | {covid-19,imaging}
|
ngs-sdk | 14 | {bio-dev}
|
- gdcm | 12 | {imaging-dev}
|
+ gdcm | 13 | {imaging-dev}
|
insighttoolkit4 | 10 | {imaging-dev}
|
invesalius | 10 | {imaging}
|
- ngs-sdk | 10 | {bio-dev}
|
adun.app | 9 | {bio}
|
- psychopy | 9 | {psychology}
|
+ ngs-sdk | 9 | {bio-dev}
|
melting | 8 | {cloud,bio}
|
minc-tools | 8 | {imaging}
|
orthanc-webviewer | 8 | {imaging}
|
- pixelmed | 8 | {imaging}
|
+ psychopy | 8 | {psychology}
|
biojava-live | 7 | {bio-dev}
|
fastlink | 7 | {bio,cloud}
|
jebl2 | 7 | {bio-dev}
|
openslide | 7 | {imaging}
|
orthanc-dicomweb | 7 | {covid-19,imaging}
|
phyutility | 7 | {bio,cloud}
|
+ pixelmed | 7 | {imaging}
|
sibsim4 | 7 | {bio,cloud}
|
sigma-align | 7 | {bio,cloud,bio-phylogeny}
|
bart-view | 6 | {imaging}
|
- lagan | 6 | {bio}
|
libdivsufsort | 6 | {bio-dev}
|
librg-utils-perl | 6 | {bio}
|
mipe | 6 | {cloud,bio}
|
@@ -40,19 +39,16 @@ Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
orthanc-mysql | 6 | {imaging}
|
piler | 6 | {bio}
|
stacks | 6 | {bio}
|
- vtk-dicom | 6 | {imaging}
|
anfo | 5 | {cloud,bio}
|
biomaj3-cli | 5 | {cloud}
|
daligner | 5 | {bio,bio-ngs}
|
- ea-utils | 5 | {bio}
|
ecopcr | 5 | {bio}
|
elastix | 5 | {imaging}
|
embassy-domainatrix | 5 | {cloud,bio}
|
embassy-domalign | 5 | {cloud,bio}
|
embassy-domsearch | 5 | {cloud,bio}
|
- gatb-core | 5 | {bio}
|
king | 5 | {typesetting,imaging}
|
- libncl | 5 | {bio}
|
+ lagan | 5 | {bio}
|
mauve-aligner | 5 | {bio}
|
neobio | 5 | {cloud,bio}
|
orthanc-postgresql | 5 | {imaging}
|
@@ -69,6 +65,7 @@ Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
squizz | 5 | {bio,cloud}
|
staden | 5 | {bio}
|
transtermhp | 5 | {bio}
|
+ vtk-dicom | 5 | {imaging}
|
alter-sequence-alignment | 4 | {bio}
|
biomaj3-daemon | 4 | {bio}
|
bio-rainbow | 4 | {bio}
|
@@ -76,13 +73,16 @@ Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
dascrubber | 4 | {bio}
|
dicompyler | 4 | {oncology}
|
dindel | 4 | {bio}
|
+ ea-utils | 4 | {bio}
|
edtsurf | 4 | {bio}
|
fastml | 4 | {bio}
|
fsm-lite | 4 | {bio}
|
+ gatb-core | 4 | {bio}
|
ghmm | 4 | {bio}
|
harvest-tools | 4 | {bio}
|
ipig | 4 | {bio}
|
libminc | 4 | {imaging-dev}
|
+ libncl | 4 | {bio}
|
librdp-taxonomy-tree-java | 4 | {bio-dev}
|
maffilter | 4 | {bio}
|
phybin | 4 | {bio}
|
@@ -123,6 +123,7 @@ Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
microbegps | 3 | {bio}
|
mrs | 3 | {bio}
|
nutsqlite | 3 | {tools}
|
+ openslide | 3 | {imaging-dev}
|
oscar | 3 | {data,practice,tools}
|
patman | 3 | {bio}
|
pbdagcon | 3 | {bio}
|
@@ -159,7 +160,6 @@ Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
libctapimkt | 2 | {practice}
|
multiqc | 2 | {bio,covid-19}
|
murasaki | 2 | {bio}
|
- openslide | 2 | {imaging-dev}
|
plasmidseeker | 2 | {bio}
|
prottest | 2 | {bio,bio-phylogeny}
|
qcumber | 2 | {bio}
|
@@ -186,11 +186,10 @@ Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
samtools-legacy | 1 | {bio-dev}
|
seqan | 1 | {bio-dev}
|
sift | 1 | {bio}
|
- sight | 1 | {imaging}
|
+ simpleitk | 1 | {imaging-dev}
|
skesa | 1 | {bio}
|
srf | 1 | {bio-dev}
|
trace2dbest | 1 | {bio}
|
- volpack | 1 | {imaging-dev}
|
bambamc | 0 | {bio-dev}
|
bamkit | 0 | {covid-19,bio}
|
bbmap | 0 | {covid-19,bio}
|
@@ -248,11 +247,12 @@ Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
pbcopper | 0 | {bio-dev}
|
pbseqlib | 0 | {bio-dev}
|
quicktree | 0 | {covid-19,bio-phylogeny,bio}
|
- relion | 0 | {bio-dev}
|
relion | 0 | {bio}
|
+ relion | 0 | {bio-dev}
|
sambamba | 0 | {bio}
|
sbmltoolbox | 0 | {bio-dev}
|
seq-gen | 0 | {bio}
|
+ sight | 0 | {imaging}
|
simpleitk | 0 | {imaging-dev}
|
skewer | 0 | {bio}
|
smrtanalysis | 0 | {bio,covid-19}
|
@@ -262,6 +262,7 @@ Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
varna | 0 | {bio}
|
varscan | 0 | {bio,covid-19}
|
vienna-rna | 0 | {covid-19,bio}
|
+ volpack | 0 | {imaging-dev}
|
vtk-dicom | 0 | {imaging-dev}
|
wtdbg2 | 0 | {covid-19}
|
bustools | -1 | {bio,covid-19}
|
@@ -272,5 +273,5 @@ Last-Update: Thu, 30 Jul 2020 01:42:03 +0000
shovill | -1 | {bio,covid-19}
|
sight | -1 | {imaging-dev}
|
yanagiba | -1 | {bio,covid-19}
|
-(299 rows)
+(300 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d307334b7844357e842a4669737b229fe2b6c6d5
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d307334b7844357e842a4669737b229fe2b6c6d5
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