Nilesh Patra pushed to branch master at Debian Med / python-biom-format
Commits: 4f8dc67e by Nilesh Patra at 2020-07-19T01:21:17+05:30 Add python3-h5py to depends - this is more than a test-only dependency - - - - - 1af2dc84 by Nilesh Patra at 2020-07-19T01:22:03+05:30 Fix import-name - - - - - 57dcd51b by Nilesh Patra at 2020-07-19T01:30:56+05:30 Fix lintian - - - - - f2e1d930 by Nilesh Patra at 2020-07-19T01:31:07+05:30 Create manpages - - - - - 35c8cb7d by Nilesh Patra at 2020-07-19T01:31:17+05:30 compat version: 13 - - - - - 6 changed files: - + debian/biom.1 - debian/control - + debian/createmanpages - + debian/manpages - + debian/python-biom-format-doc.lintian-overrides - + debian/tests/pkg-python/import-name Changes: ===================================== debian/biom.1 ===================================== @@ -0,0 +1,51 @@ +.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.12. +.TH BIOM "1" "July 2020" "biom 2.1.8" "User Commands" +.SH NAME +biom \- Biological Observation Matrix (BIOM) format (Python 3) +.SH SYNOPSIS +.B biom +[\fI\,OPTIONS\/\fR] \fI\,COMMAND \/\fR[\fI\,ARGS\/\fR]... +.SH OPTIONS +.TP +\fB\-\-version\fR +Show the version and exit. +.TP +\fB\-h\fR, \fB\-\-help\fR +Show this message and exit. +.SS "Commands:" +.TP +add\-metadata +Add metadata to a BIOM table. +.TP +convert +Convert to/from the BIOM table format. +.TP +export\-metadata +Export metadata as TSV. +.TP +from\-uc +Create a BIOM table from a vsearch/uclust/usearch BIOM... +.TP +head +Dump the first bit of a table. +.TP +normalize\-table +Normalize a BIOM table. +.TP +show\-install\-info +Provide information about the biom\-format installation. +.TP +subset\-table +Subset a BIOM table. +.TP +summarize\-table +Summarize sample or observation data in a BIOM table. +.TP +table\-ids +Dump IDs in a table. +.TP +validate\-table +Validate a BIOM\-formatted file. +.SH AUTHOR + This manpage was written by Nilesh Patra for the Debian distribution and + can be used for any other usage of the program. ===================================== debian/control ===================================== @@ -4,7 +4,7 @@ Uploaders: Andreas Tille <[email protected]> Section: python Testsuite: autopkgtest-pkg-python Priority: optional -Build-Depends: debhelper-compat (= 12), +Build-Depends: debhelper-compat (= 13), dh-python, help2man, bash-completion, @@ -28,7 +28,8 @@ Rules-Requires-Root: no Package: python3-biom-format Architecture: any-amd64 any-arm64 armel armhf any-i386 any-mips64el mipsel any-ppc64el -Depends: ${misc:Depends}, +Depends: python3-h5py, + ${misc:Depends}, ${python3:Depends}, ${shlibs:Depends} Suggests: python-biom-format-doc ===================================== debian/createmanpages ===================================== @@ -0,0 +1,29 @@ +#!/bin/sh +MANDIR=debian +mkdir -p $MANDIR + +VERSION=`dpkg-parsechangelog | awk '/^Version:/ {print $2}' | sed -e 's/^[0-9]*://' -e 's/-.*//' -e 's/[+~]dfsg$//'` +NAME=`grep "^Description:" debian/control | sed 's/^Description: *//' | head -n1` +PROGNAME=`grep "^Package:" debian/control | sed 's/^Package: *//' | head -n1` + +AUTHOR=".SH AUTHOR\n \ +This manpage was written by $DEBFULLNAME for the Debian distribution and\n \ +can be used for any other usage of the program.\ +" + +# If program name is different from package name or title should be +# different from package short description change this here +progname=biom +help2man --no-info --no-discard-stderr --help-option="-h" \ + --name="$NAME" \ + --version-string="$VERSION" ${progname} > $MANDIR/${progname}.1 +echo $AUTHOR >> $MANDIR/${progname}.1 + +echo "$MANDIR/*.1" > debian/manpages + +cat <<EOT +Please enhance the help2man output. +The following web page might be helpful in doing so: + http://liw.fi/manpages/ +EOT + ===================================== debian/manpages ===================================== @@ -0,0 +1 @@ +debian/*.1 ===================================== debian/python-biom-format-doc.lintian-overrides ===================================== @@ -0,0 +1,2 @@ +# False positive +embedded-javascript-library usr/share/doc/python-biom-format-doc/html/_static/language_data.js please use sphinx ===================================== debian/tests/pkg-python/import-name ===================================== @@ -0,0 +1 @@ +biom View it on GitLab: https://salsa.debian.org/med-team/python-biom-format/-/compare/c09032e07b5c805e1e94db040e79c57434dba1d4...35c8cb7dc1e940a14949a03a6ea59761ce7ef823 -- View it on GitLab: https://salsa.debian.org/med-team/python-biom-format/-/compare/c09032e07b5c805e1e94db040e79c57434dba1d4...35c8cb7dc1e940a14949a03a6ea59761ce7ef823 You're receiving this email because of your account on salsa.debian.org.
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