Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
714e8089 by Andreas Tille at 2020-07-10T13:44:00+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,11 +1,11 @@
-Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
+Last-Update: Fri, 10 Jul 2020 13:42:03 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 186 | {covid-19,imaging}
|
- orthanc | 95 | {covid-19,imaging,practice}
|
+ dcmtk | 187 | {covid-19,imaging}
|
+ orthanc | 96 | {covid-19,imaging,practice}
|
gdcm | 45 | {imaging-dev}
|
- orthanc-wsi | 43 |
{his,practice,covid-19,laboratory,imaging,oncology} |
+ orthanc-wsi | 44 |
{his,practice,covid-19,laboratory,imaging,oncology} |
htsjdk | 33 | {bio-dev}
|
dicom3tools | 24 | {imaging}
|
dcm2niix | 23 | {imaging}
|
@@ -16,9 +16,9 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
gdcm | 13 | {imaging-dev}
|
insighttoolkit4 | 13 | {imaging-dev}
|
invesalius | 13 | {imaging}
|
- pixelmed | 13 | {imaging}
|
jebl2 | 12 | {bio-dev}
|
minc-tools | 12 | {imaging}
|
+ pixelmed | 12 | {imaging}
|
vtk-dicom | 10 | {imaging}
|
lagan | 9 | {bio}
|
libdivsufsort | 9 | {bio-dev}
|
@@ -28,17 +28,18 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
king | 8 | {imaging,typesetting}
|
melting | 8 | {bio,cloud}
|
ngs-sdk | 8 | {bio-dev}
|
+ orthanc-webviewer | 8 | {imaging}
|
plastimatch | 8 | {imaging}
|
psychopy | 8 | {psychology}
|
dicompyler | 7 | {oncology}
|
libminc | 7 | {imaging-dev}
|
- librg-utils-perl | 7 | {bio}
|
- orthanc-webviewer | 7 | {imaging}
|
+ orthanc-dicomweb | 7 | {imaging,covid-19}
|
stacks | 7 | {bio}
|
treeview | 7 | {bio-phylogeny,bio}
|
biojava-live | 6 | {bio-dev}
|
ea-utils | 6 | {bio}
|
- orthanc-dicomweb | 6 | {imaging,covid-19}
|
+ librg-utils-perl | 6 | {bio}
|
+ orthanc-mysql | 6 | {imaging}
|
paraclu | 6 | {cloud,bio}
|
anfo | 5 | {bio,cloud}
|
biomaj3-cli | 5 | {cloud}
|
@@ -48,7 +49,9 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
mlv-smile | 5 | {bio,cloud}
|
ncbi-seg | 5 | {bio}
|
obitools | 5 | {bio}
|
- orthanc-mysql | 5 | {imaging}
|
+ orthanc-postgresql | 5 | {imaging}
|
+ rdp-alignment | 5 | {bio}
|
+ rdp-readseq | 5 | {bio}
|
sibsim4 | 5 | {bio,cloud}
|
sigma-align | 5 | {bio-phylogeny,cloud,bio}
|
staden | 5 | {bio}
|
@@ -62,19 +65,16 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
mipe | 4 | {cloud,bio}
|
neobio | 4 | {cloud,bio}
|
nutsqlite | 4 | {tools}
|
- orthanc-postgresql | 4 | {imaging}
|
phyutility | 4 | {bio,cloud}
|
piler | 4 | {bio}
|
predictprotein | 4 | {bio}
|
pymia | 4 | {imaging-dev}
|
qrisk2 | 4 | {practice}
|
- rdp-alignment | 4 | {bio}
|
- rdp-readseq | 4 | {bio}
|
scythe | 4 | {bio}
|
- snap-aligner | 4 | {bio}
|
spread-phy | 4 | {bio-phylogeny,bio}
|
squizz | 4 | {bio,cloud}
|
transtermhp | 4 | {bio}
|
+ alter-sequence-alignment | 3 | {bio}
|
ampliconnoise | 3 | {cloud,bio}
|
bandage | 3 | {bio}
|
brig | 3 | {bio}
|
@@ -98,6 +98,7 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
probabel | 3 | {cloud,bio}
|
rdp-classifier | 3 | {bio}
|
relion | 3 | {bio}
|
+ runcircos-gui | 3 | {bio}
|
saint | 3 | {bio}
|
salmon | 3 | {bio,covid-19}
|
seqmagick | 3 | {covid-19,bio}
|
@@ -105,7 +106,6 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
tnseq-transit | 3 | {covid-19,bio}
|
tracetuner | 3 | {bio}
|
tvc | 3 | {bio}
|
- alter-sequence-alignment | 2 | {bio}
|
arden | 2 | {bio,cloud}
|
assemblytics | 2 | {bio}
|
baitfisher | 2 | {bio}
|
@@ -156,7 +156,6 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
repeatmasker-recon | 2 | {bio}
|
roguenarok | 2 | {bio}
|
rtax | 2 | {cloud,bio}
|
- runcircos-gui | 2 | {bio}
|
samblaster | 2 | {covid-19,bio}
|
samtools-legacy | 2 | {bio-dev}
|
scrm | 2 | {bio}
|
@@ -197,7 +196,6 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
trace2dbest | 1 | {bio}
|
velvetoptimiser | 1 | {bio}
|
volpack | 1 | {imaging-dev}
|
- wtdbg2 | 1 | {covid-19}
|
acedb | 0 | {cloud,bio}
|
atropos | 0 | {bio}
|
augur | 0 | {covid-19,bio}
|
@@ -253,10 +251,9 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
parallel-fastq-dump | 0 | {covid-19}
|
pbseqlib | 0 | {bio-dev}
|
pilercr | 0 | {bio}
|
- python-py2bit | 0 | {bio,bio-dev}
|
quicktree | 0 | {bio,covid-19,bio-phylogeny}
|
- relion | 0 | {bio-dev}
|
relion | 0 | {bio}
|
+ relion | 0 | {bio-dev}
|
sambamba | 0 | {bio}
|
sbmltoolbox | 0 | {bio-dev}
|
seq-gen | 0 | {bio}
|
@@ -270,9 +267,10 @@ Last-Update: Fri, 10 Jul 2020 01:42:03 +0000
varna | 0 | {bio}
|
varscan | 0 | {covid-19,bio}
|
vtk-dicom | 0 | {imaging-dev}
|
+ wtdbg2 | 0 | {covid-19}
|
bustools | -1 | {bio,covid-19}
|
pycoqc | -1 | {covid-19,bio}
|
shovill | -1 | {bio,covid-19}
|
yanagiba | -1 | {bio,covid-19}
|
-(301 rows)
+(299 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/714e80896bdf5c9af50b8546066a9142ec21a24b
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/714e80896bdf5c9af50b8546066a9142ec21a24b
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