Andreas Tille pushed to branch master at Debian Med / seqkit
Commits: 153df7cd by Andreas Tille at 2020-06-27T10:28:50+02:00 Initial packaging attempt - - - - - 8 changed files: - + debian/changelog - + debian/control - + debian/copyright - + debian/rules - + debian/salsa-ci.yml - + debian/source/format - + debian/upstream/metadata - + debian/watch Changes: ===================================== debian/changelog ===================================== @@ -0,0 +1,5 @@ +seqkit (0.12.1-1) UNRELEASED; urgency=medium + + * Initial release (Closes: #<bug>) + + -- Andreas Tille <[email protected]> Sat, 27 Jun 2020 08:34:29 +0200 ===================================== debian/control ===================================== @@ -0,0 +1,25 @@ +Source: seqkit +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Andreas Tille <[email protected]> +Section: science +Priority: optional +Build-Depends: debhelper-compat (= 13), + dh-golang, + golang-any +Standards-Version: 4.5.0 +Vcs-Browser: https://salsa.debian.org/med-team/seqkit +Vcs-Git: https://salsa.debian.org/med-team/seqkit.git +Homepage: https://github.com/shenwei356/seqkit + +Package: seqkit +Architecture: any +Depends: ${shlibs:Depends}, + ${misc:Depends} +Description: cross-platform and ultrafast toolkit for FASTA/Q file manipulation + SeqKit describes a cross-platform ultrafast comprehensive toolkit for + FASTA/Q processing. SeqKit provides executable binary files for all + major operating systems, including Windows, Linux, and Mac OS X, and can + be directly used without any dependencies or pre-configurations. SeqKit + demonstrates competitive performance in execution time and memory usage + compared to similar tools. The efficiency and usability of SeqKit enable + researchers to rapidly accomplish common FASTA/Q file manipulations. ===================================== debian/copyright ===================================== @@ -0,0 +1,30 @@ +Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Upstream-Name: SeqKit +Source: https://github.com/shenwei356/seqkit/releases + +Files: * +Copyright: 2016-2020 Wei Shen, 2019 Oxford Nanopore Technologies. +License: MIT + +Files: debian/* +Copyright: 2020 Andreas Tille <[email protected]> +License: MIT + +License: MIT + Permission is hereby granted, free of charge, to any person obtaining a copy + of this software and associated documentation files (the "Software"), to deal + in the Software without restriction, including without limitation the rights + to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + copies of the Software, and to permit persons to whom the Software is + furnished to do so, subject to the following conditions: + . + The above copyright notice and this permission notice shall be included in + all copies or substantial portions of the Software. + . + THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN + THE SOFTWARE. ===================================== debian/rules ===================================== @@ -0,0 +1,27 @@ +#!/usr/bin/make -f + +# DH_VERBOSE := 1 +export LC_ALL=C.UTF-8 + +include /usr/share/dpkg/default.mk +# this provides: +# DEB_SOURCE: the source package name +# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision) +# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision +# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch +# DEB_VERSION_UPSTREAM: the package's upstream version +# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog +# SOURCE_DATE_EPOCH: the source release date as seconds since the epoch, as +# specified by <https://reproducible-builds.org/specs/source-date-epoch/> + +# for hardening you might like to uncomment this: +# export DEB_BUILD_MAINT_OPTIONS=hardening=+all + +%: + dh $@ --buildsystem=golang --with=golang --builddirectory=build # --sourcedirectory=seqkit + +### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected +#override_dh_auto_test: +#ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) +# do_stuff_for_testing +#endif ===================================== debian/salsa-ci.yml ===================================== @@ -0,0 +1,4 @@ +--- +include: + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml + - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml ===================================== debian/source/format ===================================== @@ -0,0 +1 @@ +3.0 (quilt) ===================================== debian/upstream/metadata ===================================== @@ -0,0 +1,17 @@ +Reference: + Author: Wei Shen and Shuai Le and Yan Li and Fuquan Hu + Title: > + SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation + Journal: PlosOne + Year: 2016 + Volume: 11 + Number: 10 + Pages: e0163962 + DOI: 10.1371/journal.pone.0163962 + PMID: 27706213 + PMCID: PMC5051824 + URL: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0163962 + eprint: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0163962&type=printable +Registry: + - Name: conda:bioconda + Entry: seqkit ===================================== debian/watch ===================================== @@ -0,0 +1,4 @@ +version=4 + +opts="filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE@-$1.tar.gz%" \ +https://github.com/shenwei356/seqkit/releases .*/archive/v?@ANY_VERSION@\.tar\.gz View it on GitLab: https://salsa.debian.org/med-team/seqkit/-/commit/153df7cd071cdcdcf2f848d0c6765e197159cc9a -- View it on GitLab: https://salsa.debian.org/med-team/seqkit/-/commit/153df7cd071cdcdcf2f848d0c6765e197159cc9a You're receiving this email because of your account on salsa.debian.org.
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