Shayan Doust pushed to branch master at Debian Med / covtobed
Commits:
cc06efa5 by Shayan Doust at 2020-06-04T16:46:29+01:00
Test should remove output.test not test/output.test
- - - - -
1 changed file:
- debian/patches/test_use_system_installed_binary.patch
Changes:
=====================================
debian/patches/test_use_system_installed_binary.patch
=====================================
@@ -84,7 +84,7 @@ Last-Update: 2020-06-04
then
echo PASS 6
else
-@@ -88,8 +68,8 @@
+@@ -88,11 +68,11 @@
# Checking BED output with reference output file
echo -n " - Checking identity of BED output with pre-calculated: "
@@ -94,8 +94,12 @@ Last-Update: 2020-06-04
+if [ $(diff output.test /usr/share/doc/covtobed-examples/examples/output.bed
| wc -l) -eq "0" ];
then
echo PASS 7
- rm test/output.test
-@@ -100,8 +80,8 @@
+- rm test/output.test
++ rm output.test
+ else
+ echo FAIL
+ exit 1
+@@ -100,11 +80,11 @@
## Synthetic BAM test
echo -n " - Checking computed coverage for a synthetic BAM file: "
@@ -105,7 +109,11 @@ Last-Update: 2020-06-04
+if [ $(diff output.test /usr/share/doc/covtobed-examples/examples/mock.bed |
wc -l) -eq "0" ];
then
echo PASS 8
- rm test/output.test
+- rm test/output.test
++ rm output.test
+ else
+ echo FAIL
+ exit 1
@@ -112,23 +92,23 @@
## Filter non valid alignments
View it on GitLab:
https://salsa.debian.org/med-team/covtobed/-/commit/cc06efa5d2cb079d35e24bd455bd2cdddb6ba8bb
--
View it on GitLab:
https://salsa.debian.org/med-team/covtobed/-/commit/cc06efa5d2cb079d35e24bd455bd2cdddb6ba8bb
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