Steffen Möller pushed to branch master at Debian Med / megahit
Commits: 2e09cf8b by Steffen Moeller at 2020-05-24T16:35:56+02:00 Well done! I had sadly seen this package only when I wanted to claim my space on salsa.d.o/med-team. Have now also added it to our blends page and merged what I had in surplus packaging. - - - - - 4 changed files: - + debian/TODO - debian/control - debian/copyright - debian/upstream/metadata Changes: ===================================== debian/TODO ===================================== @@ -0,0 +1 @@ + * xxHash is distributed with Debian - consider investing into repacking ===================================== debian/control ===================================== @@ -26,3 +26,6 @@ Description: ultra-fast and memory-efficient meta-genome assembler Megahit is an ultra-fast and memory-efficient NGS assembler. It is optimized for metagenomes, but also works well on generic single genome assembly (small or mammalian size) and single-cell assembly. + . + The software was praised in a Briefings in Bioinformatics 5/2020 + review (DOI: 10.1093/bib/bbaa085). ===================================== debian/copyright ===================================== @@ -1,5 +1,5 @@ Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ -Upstream-Name: megahit +Upstream-Name: MEGAHIT Source: https://github.com/voutcn/megahit Files: * @@ -36,6 +36,9 @@ License: GPL-3+ Files: debian/* Copyright: 2019 Shayan Doust <[email protected]> + with contributions by + Andreas Tille <[email protected]> + Steffen Moeller <[email protected]> License: GPL-3+ License: BSD-2-clause ===================================== debian/upstream/metadata ===================================== @@ -1,14 +1,36 @@ Reference: - Author: > + - Author: > Dinghua Li and Chi-Man Liu and Ruibang Luo and Kunihiko Sadakane and Tak-Wah Lam - Title: > + Title: > MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph - Year: 2015 - Volume: 31 - Pages: 1674-1676 - DOI: 10.1093/bioinformatics/btv033 - PMID: 25609793 - URL: https://www.ncbi.nlm.nih.gov/pubmed/25609793 + Year: 2015 + Volume: 31 + Pages: 1674-1676 + DOI: 10.1093/bioinformatics/btv033 + PMID: 25609793 + URL: https://www.ncbi.nlm.nih.gov/pubmed/25609793 + - Author: > + Li, D. and Luo, R. and Liu, C.M. and Leung, C.M. and Ting, H.F. and + Sadakane, K. and Yamashita, H. and Lam, T.W. + Year: 2016 + Month: 6 + Title: > + MEGAHIT v1.0: A Fast and Scalable Metagenome Assembler driven by + Advanced Methodologies and Community Practices. + Journal: Methods + Volume: 102 + Pages: 3-11 + DOI: 10.1016/j.ymeth.2016.02.020 + PMID: 27012178 Other-References: https://github.com/voutcn/megahit +Registry: + - Name: bio.tools + Entry: megahit + - Name: conda:bioconda + Entry: megahit + - Name: OMICtools + Entry: OMICS_07234 + - Name: SciCrunch + Entry: NA View it on GitLab: https://salsa.debian.org/med-team/megahit/-/commit/2e09cf8b627e400cbad33be7ce80d938ae6f574c -- View it on GitLab: https://salsa.debian.org/med-team/megahit/-/commit/2e09cf8b627e400cbad33be7ce80d938ae6f574c You're receiving this email because of your account on salsa.debian.org.
_______________________________________________ debian-med-commit mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-commit
