Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
f1997e67 by Andreas Tille at 2020-04-09T01:44:46+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Wed, 08 Apr 2020 13:42:03 +0000
+Last-Update: Thu, 09 Apr 2020 01:42:03 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Wed, 08 Apr 2020 13:42:04 +0000
+Last-Update: Thu, 09 Apr 2020 01:42:03 +0000
source | version |
upstream_version | uploaders
| Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-------------------------------------------------------------------------+----------------------+------------------------
@@ -172,7 +172,6 @@ Last-Update: Wed, 08 Apr 2020 13:42:04 +0000
metaphlan2-data | 839925 | important | metaphlan2-data:
postinst deletes shipped file: /var/lib/metaphlan2-data/markers.fasta
mipe | 890788 | minor | mipe: Please provide
autopkgtest
mriconvert | 617342 | normal | 32-bit multiframe image
conversion ignores frames
- mypy | 952757 | minor | mypy(1): build errors in
man page
nanopolish | 956136 | serious | nanopolish: FTBFS
(undefined references)
ncbi-blast+ | 891197 | normal | Please switch to pcre2
ncbi-tools6 | 225651 | wishlist | ncbi-tools-x11: want
Cn3D++
@@ -206,7 +205,6 @@ Last-Update: Wed, 08 Apr 2020 13:42:04 +0000
prokka | 924128 | normal | prokka: creates world
writable directory tree /var/lib/prokka/*
psychopy | 730810 | normal | psychopy: Movie support
suboptimal
psychopy | 829424 | normal | psychopy: ioHub uses
inappropriate PID file location
- psychopy | 953052 | important | psychopy: python2
dependencies
psychopy | 953053 | important | psychopy: missing
python3 dependencies
pynast | 937488 | serious | pynast: Python2 removal
in sid/bullseye
pynast | 948081 | serious | pynast build depends on
and recommends the removed blast2 transitional package
@@ -221,8 +219,8 @@ Last-Update: Wed, 08 Apr 2020 13:42:04 +0000
python-pbcore | 919052 | normal | python-pbcore: some docs
for pbcore are not found
python-pysam | 938092 | normal | python-pysam: Python2
removal in sid/bullseye
python-ruffus | 841073 | wishlist | python-ruffus: Needs 18
GB of RAM to build
- python-tinyalign | 952603 | normal | python-tinyalign:
license of buildwheels.sh is CC0
q2cli | 954601 | serious | q2cli: FTBFS:
dh_auto_test: error: pybuild --test --test-nose -i python{version} -p 3.8 -s
custom "--test-args=cd {build_dir}; HOME=/<<PKGBUILDDIR>> QIIMETEST=
nosetests3" returned exit code 13
+ q2-cutadapt | 956220 | normal | FTBFS: FileNotFoundError
q2-demux | 950933 | normal | q2-demux: FTBFS with
pandas 1.0: test failures
q2templates | 950931 | normal | q2templates: FTBFS with
pandas 1.0: test failures
q2-types | 950932 | normal | q2-types: FTBFS with
pandas 1.0: test failures
@@ -255,6 +253,7 @@ Last-Update: Wed, 08 Apr 2020 13:42:04 +0000
sprai | 943280 | normal | sprai: Python2 removal
in sid/bullseye
sra-sdk | 943231 | normal | sra-sdk: Python2 removal
in sid/bullseye
sra-sdk | 952623 | serious | sra-sdk: FTBFS: ld:
/usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to
`vdb_mbedtls_entropy_init'
+ sumaclust | 956232 | normal | sumaclust: Last sequence
of input is skipped on arm64
tree-puzzle | 806214 | normal | tree-puzzle: Package
fails test suite
tree-puzzle | 890790 | minor | tree-puzzle: Please
provide autopkgtest
tree-puzzle | 951984 | serious | tree-puzzle: FTBFS:
mpi.h:322:57: error: static assertion failed: "MPI_Address was removed in
MPI-3.0. Use MPI_Get_address instead."
@@ -265,5 +264,5 @@ Last-Update: Wed, 08 Apr 2020 13:42:04 +0000
xmedcon | 671828 | normal | xmedcon: Cannot open
file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading
dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(195 rows)
+(194 rows)
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f1997e672b98b3054d8fb07ed7bbd161a0dc1c17
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f1997e672b98b3054d8fb07ed7bbd161a0dc1c17
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