Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
134775f4 by Andreas Tille at 2020-03-20T01:44:35+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Thu, 19 Mar 2020 13:42:03 +0000
+Last-Update: Fri, 20 Mar 2020 01:42:03 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Thu, 19 Mar 2020 13:42:03 +0000
+Last-Update: Fri, 20 Mar 2020 01:42:03 +0000
source | version |
upstream_version | uploaders
| Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+------------------------+------------------------
@@ -153,7 +153,6 @@ Last-Update: Thu, 19 Mar 2020 13:42:03 +0000
gentle | 732691 | normal | Pressing "alignment or
Ctrl+G" only results in a dialog with a cancel button
ghmm | 936609 | normal | ghmm: Python2 removal in
sid/bullseye
harvest-tools | 943055 | normal | harvest-tools: Python2
removal in sid/bullseye
- hinge | 952615 | serious | hinge: FTBFS:
fmt.h:22:10: fatal error: spdlog/fmt/bundled/core.h: No such file or directory
htsjdk | 877590 | normal | FTBFS: error: package
org.testng does not exist
htsjdk | 920588 | normal | htsjdk: Autopkgtest for
htsjdk
htslib | 922860 | normal | Packages do not contain
the upstream README file
@@ -172,6 +171,7 @@ Last-Update: Thu, 19 Mar 2020 13:42:03 +0000
khmer | 851830 | minor | arm64 has flaky tests
kineticstools | 936797 | serious | kineticstools: Python2
removal in sid/bullseye
kissplice | 936798 | normal | kissplice: Python2
removal in sid/bullseye
+ kmc | 954270 | important | kmc: arm64 autopkgtest
time out
kmer | 936802 | normal | kmer: Python2 removal in
sid/bullseye
lambda-align2 | 953081 | grave | lambda-align2: empty
package on !amd64
libgtextutils | 925745 | serious | libgtextutils: ftbfs
with GCC-9
@@ -229,6 +229,7 @@ Last-Update: Thu, 19 Mar 2020 13:42:03 +0000
psychopy | 829424 | normal | psychopy: ioHub uses
inappropriate PID file location
psychopy | 953052 | important | psychopy: python2
dependencies
psychopy | 953053 | important | psychopy: missing
python3 dependencies
+ pybel | 954253 | serious | python3-pybel: Missing
dependency on unpackaged bel_resources
pynast | 937488 | normal | pynast: Python2 removal
in sid/bullseye
pynast | 948081 | serious | pynast build depends on
and recommends the removed blast2 transitional package
python-biom-format | 820060 | normal | python-biom-format:
broken on big-endian architectures
@@ -258,6 +259,7 @@ Last-Update: Thu, 19 Mar 2020 13:42:03 +0000
sambamba | 948919 | serious | sambamba FTBFS:
undefined reference to 'cram_to_bam'
seqan2 | 892222 | normal | seqan2: FTBFS on hppa:
app_test_seqan_tcoffee fails on 2trx.mlcs.fasta
seqan2 | 917851 | important | seqan2 2.4.0+dfsg-9:
FTBFS, alignment problem
+ simka | 954273 | important | simka: arm64 autopkgtest
time out
simpleitk | 949355 | serious | simpleitk FTBFS: test
failures
skesa | 952627 | serious | skesa: FTBFS: ld:
/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so:
undefined reference to `vdb_mbedtls_entropy_init'
snakemake | 943956 | wishlist | snakemake: please make
the build reproducible
@@ -273,6 +275,7 @@ Last-Update: Thu, 19 Mar 2020 13:42:03 +0000
sra-sdk | 943231 | normal | sra-sdk: Python2 removal
in sid/bullseye
sra-sdk | 952623 | serious | sra-sdk: FTBFS: ld:
/usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to
`vdb_mbedtls_entropy_init'
sumaclust | 952093 | serious | sumaclust: FTBFS:
mtcompare_sumaclust.c:18:10: fatal error: libfasta/sequence.h: No such file or
directory
+ sumaclust | 954262 | serious | src:sumaclust: fails to
migrate to testing for too long
tree-puzzle | 806214 | normal | tree-puzzle: Package
fails test suite
tree-puzzle | 890790 | minor | tree-puzzle: Please
provide autopkgtest
tree-puzzle | 951984 | serious | tree-puzzle: FTBFS:
mpi.h:322:57: error: static assertion failed: "MPI_Address was removed in
MPI-3.0. Use MPI_Get_address instead."
@@ -283,5 +286,5 @@ Last-Update: Thu, 19 Mar 2020 13:42:03 +0000
xmedcon | 671828 | normal | xmedcon: Cannot open
file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading
dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(198 rows)
+(201 rows)
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/134775f49d9aaba84cffc48f4b03d695be298067
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/134775f49d9aaba84cffc48f4b03d695be298067
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