Andreas Tille pushed to branch master at Debian Med / htslib
Commits:
0eb2a7cd by Andreas Tille at 2018-02-14T13:13:09+01:00
Update symbols file
- - - - -
60702c25 by Andreas Tille at 2018-02-14T13:16:38+01:00
Upload to unstable
- - - - -
2 changed files:
- debian/changelog
- debian/libhts2.symbols
Changes:
=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,10 +1,11 @@
-htslib (1.7-2) UNRELEASED; urgency=medium
+htslib (1.7-2) unstable; urgency=medium
* Move all needed files into htslib-test package
Closes: #890303
* Document how to test the package
+ * Update symbols file
- -- Andreas Tille <[email protected]> Wed, 14 Feb 2018 09:43:36 +0100
+ -- Andreas Tille <[email protected]> Wed, 14 Feb 2018 13:13:18 +0100
htslib (1.7-1) unstable; urgency=medium
=====================================
debian/libhts2.symbols
=====================================
--- a/debian/libhts2.symbols
+++ b/debian/libhts2.symbols
@@ -14,6 +14,7 @@ libhts.so.2 libhts2 #MINVER#
bam_aux_update_str@Base 1.4.1
bam_cigar2qlen@Base 1.0
bam_cigar2rlen@Base 1.0
+ bam_cigar2rqlens@Base 1.7
bam_construct_seq@Base 1.0
bam_copy1@Base 1.0
bam_destroy1@Base 1.0
@@ -142,10 +143,12 @@ libhts.so.2 libhts2 #MINVER#
bcf_sr_set_samples@Base 1.0
bcf_sr_set_targets@Base 1.0
bcf_sr_set_threads@Base 1.4.1
+ bcf_sr_sort_add_active@Base 1.7
bcf_sr_sort_destroy@Base 1.4.1
bcf_sr_sort_init@Base 1.4.1
bcf_sr_sort_next@Base 1.4.1
bcf_sr_sort_remove_reader@Base 1.4.1
+ bcf_sr_sort_set_active@Base 1.7
bcf_sr_strerror@Base 1.2.1
bcf_subset@Base 1.0
bcf_subset_format@Base 1.0
@@ -326,6 +329,7 @@ libhts.so.2 libhts2 #MINVER#
cram_huffman_encode_store@Base 1.0
cram_index_build@Base 1.0
cram_index_free@Base 1.0
+ cram_index_last@Base 1.7
cram_index_load@Base 1.0
cram_index_query@Base 1.0
cram_load_reference@Base 1.0
@@ -403,9 +407,12 @@ libhts.so.2 libhts2 #MINVER#
hfile_destroy@Base 1.0
hfile_init@Base 1.0
hfile_init_fixed@Base 1.4.1
+ hfile_mem_get_buffer@Base 1.7
+ hfile_mem_steal_buffer@Base 1.7
hfile_oflags@Base 1.0
hfile_plugin_init_gcs@Base 1.4.1
hfile_plugin_init_libcurl@Base 1.3.1
+ hfile_plugin_init_mem@Base 1.7
hfile_plugin_init_net@Base 1.3
hfile_plugin_init_s3@Base 1.4.1
hfile_set_blksize@Base 1.5
@@ -417,6 +424,7 @@ libhts.so.2 libhts2 #MINVER#
hopen@Base 1.0
hopen_htsget_redirect@Base 1.6
hopen_net@Base 1.0
+ hopenv_mem@Base 1.7
hpeek@Base 1.0
hputc2@Base 1.0
hputs2@Base 1.0
@@ -454,13 +462,23 @@ libhts.so.2 libhts2 #MINVER#
hts_idx_seqnames@Base 1.0
hts_idx_set_meta@Base 1.0
hts_itr_destroy@Base 1.0
+ hts_itr_multi_bam@Base 1.7
+ hts_itr_multi_cram@Base 1.7
+ hts_itr_multi_destroy@Base 1.7
+ hts_itr_multi_next@Base 1.7
hts_itr_next@Base 1.0
+ hts_itr_off@Base 1.7
hts_itr_query@Base 1.0
hts_itr_querys@Base 1.0
+ hts_itr_regions@Base 1.7
+ hts_json_alloc_token@Base 1.7
hts_json_fnext@Base 1.4.1
+ hts_json_free_token@Base 1.7
hts_json_fskip_value@Base 1.4.1
hts_json_snext@Base 1.4.1
hts_json_sskip_value@Base 1.4.1
+ hts_json_token_str@Base 1.7
+ hts_json_token_type@Base 1.7
hts_log@Base 1.5
hts_lrand48@Base 1.6
hts_md5_destroy@Base 1.3
@@ -481,6 +499,7 @@ libhts.so.2 libhts2 #MINVER#
hts_readlines@Base 1.0
hts_readlist@Base 1.0
hts_realloc_or_die@Base 1.4.1
+ hts_reglist_free@Base 1.7
hts_set_cache_size@Base 1.4.1
hts_set_fai_filename@Base 1.0
hts_set_log_level@Base 1.5
@@ -555,20 +574,28 @@ libhts.so.2 libhts2 #MINVER#
knet_seek@Base 1.0
kputd@Base 1.4.1
ks_combsort__off@Base 1.0
+ ks_combsort__off_max@Base 1.7
ks_combsort_uint16_t@Base 1.4.1
ks_heapadjust__off@Base 1.0
+ ks_heapadjust__off_max@Base 1.7
ks_heapadjust_uint16_t@Base 1.4.1
ks_heapmake__off@Base 1.0
+ ks_heapmake__off_max@Base 1.7
ks_heapmake_uint16_t@Base 1.4.1
ks_heapsort__off@Base 1.0
+ ks_heapsort__off_max@Base 1.7
ks_heapsort_uint16_t@Base 1.4.1
ks_introsort__off@Base 1.0
+ ks_introsort__off_max@Base 1.7
ks_introsort_uint16_t@Base 1.4.1
ks_ksmall__off@Base 1.0
+ ks_ksmall__off_max@Base 1.7
ks_ksmall_uint16_t@Base 1.4.1
ks_mergesort__off@Base 1.0
+ ks_mergesort__off_max@Base 1.7
ks_mergesort_uint16_t@Base 1.4.1
ks_shuffle__off@Base 1.0
+ ks_shuffle__off_max@Base 1.7
ks_shuffle_uint16_t@Base 1.4.1
ksplit_core@Base 1.0
ksprintf@Base 1.0
@@ -639,6 +666,7 @@ libhts.so.2 libhts2 #MINVER#
sam_hdr_add@Base 1.0
sam_hdr_add_PG@Base 1.0
sam_hdr_add_lines@Base 1.0
+ sam_hdr_change_HD@Base 1.7
sam_hdr_decr_ref@Base 1.0
sam_hdr_dump@Base 1.0
sam_hdr_dup@Base 1.0
@@ -668,6 +696,7 @@ libhts.so.2 libhts2 #MINVER#
sam_index_load@Base 1.0
sam_itr_queryi@Base 1.0
sam_itr_querys@Base 1.0
+ sam_itr_regions@Base 1.7
sam_open_mode@Base 1.0
sam_open_mode_opts@Base 1.3
sam_parse1@Base 1.0
View it on GitLab:
https://salsa.debian.org/med-team/htslib/compare/ede72ab70551f396c3ae143be79d83a652ed7e17...60702c2523a31f6ae27dc88174332963c59acb55
---
View it on GitLab:
https://salsa.debian.org/med-team/htslib/compare/ede72ab70551f396c3ae143be79d83a652ed7e17...60702c2523a31f6ae27dc88174332963c59acb55
You're receiving this email because of your account on salsa.debian.org.
_______________________________________________
debian-med-commit mailing list
[email protected]
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
