Author: plessy Date: 2013-07-14 10:26:29 +0000 (Sun, 14 Jul 2013) New Revision: 14158
Added: trunk/packages/t-coffee/tags/9.03.r1318-1/ trunk/packages/t-coffee/tags/9.03.r1318-1/debian/changelog trunk/packages/t-coffee/tags/9.03.r1318-1/debian/compat trunk/packages/t-coffee/tags/9.03.r1318-1/debian/control trunk/packages/t-coffee/tags/9.03.r1318-1/debian/copyright trunk/packages/t-coffee/tags/9.03.r1318-1/debian/patches/probconsrna.patch Removed: trunk/packages/t-coffee/tags/9.03.r1318-1/debian/README.test trunk/packages/t-coffee/tags/9.03.r1318-1/debian/changelog trunk/packages/t-coffee/tags/9.03.r1318-1/debian/compat trunk/packages/t-coffee/tags/9.03.r1318-1/debian/control trunk/packages/t-coffee/tags/9.03.r1318-1/debian/copyright trunk/packages/t-coffee/tags/9.03.r1318-1/debian/patches/probconsrna.patch Log: [svn-buildpackage] Tagging t-coffee 9.03.r1318-1 Deleted: trunk/packages/t-coffee/tags/9.03.r1318-1/debian/README.test =================================================================== --- trunk/packages/t-coffee/trunk/debian/README.test 2013-07-13 07:50:35 UTC (rev 14148) +++ trunk/packages/t-coffee/tags/9.03.r1318-1/debian/README.test 2013-07-14 10:26:29 UTC (rev 14158) @@ -1,4 +0,0 @@ -T-COFFEE is tested at build time by running the Perl ‘bin/test.pl’. -Results can be seen in the build logs at the following URL. - -https://buildd.debian.org/t-coffee Deleted: trunk/packages/t-coffee/tags/9.03.r1318-1/debian/changelog =================================================================== --- trunk/packages/t-coffee/trunk/debian/changelog 2013-07-13 07:50:35 UTC (rev 14148) +++ trunk/packages/t-coffee/tags/9.03.r1318-1/debian/changelog 2013-07-14 10:26:29 UTC (rev 14158) @@ -1,178 +0,0 @@ -t-coffee (9.03.r1318-1ubuntu2) precise; urgency=low - - * Rebuild for Ubuntu with new upstream - * Removed the -doc package as it is empty - docs are no longer in - tarball but online: - http://www.tcoffee.org/Projects/tcoffee/#DOCUMENTATION - * Rejigged the rules file to use DH, not CDBS - * Avoid compressing files under t-coffee-examples - * Remove TMalign binary on clean (should avoid building it at all) - * Fix minor typo flagged by Lintian - - -- Tim Booth <[email protected]> Wed, 22 Aug 2012 17:33:25 +0100 - -t-coffee (9.02.r1228-3) UNRELEASED; urgency=low - - * debian/upstream: Single Reference field instead of Reference-* - - -- Andreas Tille <[email protected]> Wed, 07 Mar 2012 23:35:03 +0100 - -t-coffee (9.02.r1228-2) unstable; urgency=low - - * Recommend tm-align instead of distributing local copy - (debian/control, debian/t-coffee.install, Closes: #661516). - - -- Charles Plessy <[email protected]> Fri, 02 Mar 2012 14:04:20 +0900 - -t-coffee (9.02.r1228-1) unstable; urgency=low - - * New upstream release (Closes: #649263). - * Build new Fortran tool (debian/rules debian/contol debian/t-coffee.install) - * Corrected debian/rules as upstream test suite was removed. - * Complies with Policy 3.9.3 (debian/control, no other changes needed). - * Removed doc-base registrations debian/t-coffee-doc.doc-base.technical and - debian/t-coffee-doc.doc-base.tutorial, as the files disappeared upstream. - - -- Charles Plessy <[email protected]> Mon, 27 Feb 2012 13:09:36 +0900 - -t-coffee (8.99-1) unstable; urgency=low - - * New upstream release in Debian. - * Converted and validated debian/copyright to DEP 5 machine-readable format. - * Using debhelper 8 (debian/control, debian/compat). - * Incremented Standards-Version to reflect conformance with Policy 3.9.2. - (debian/control, no change needed). - * Corrected VCS URLs in debian/control. - * Run upstream tests at build time (debian/rules, debian/README.test). - - -- Charles Plessy <[email protected]> Tue, 21 Jun 2011 14:14:10 +0900 - -t-coffee (8.99-0ubuntu1) lucid; urgency=low - - * Rebuild for new upstream release. - * There is no changelog from upstream to read. - - -- Tim Booth <[email protected]> Sat, 29 Jan 2011 15:18:01 +0000 - -t-coffee (8.97-0ubuntu2) lucid; urgency=low - - * New upstream release, changed watch file and auto rebuild using uupdate - * Cleared out old patch - apparently unneeded or else needs total re-write - - -- Tim Booth <[email protected]> Tue, 23 Nov 2010 14:01:22 +0000 - -t-coffee (8.95-1) lucid; urgency=low - - * New upstream version, rebuild by Tim for Bio-Linux/Lucid - - -- Tim Booth <[email protected]> Mon, 01 Nov 2010 15:05:07 +0000 - -t-coffee (8.84-1) unstable; urgency=low - - * New upstream version - - -- Andreas Tille <[email protected]> Thu, 24 Jun 2010 14:46:16 +0200 - -t-coffee (8.47-1) unstable; urgency=low - - [ Charles Plessy ] - * Collected Upstream information in debian/upstream-metadata.yaml. - - [ Andreas Tille ] - * New upstream version - * Source format 3.0 (quilt) - * Standards-Version: 3.8.4 (no changes needed) - - -- Andreas Tille <[email protected]> Fri, 09 Apr 2010 21:08:32 +0200 - -t-coffee (8.14-1) unstable; urgency=low - - * New upstream version - - -- Andreas Tille <[email protected]> Tue, 03 Nov 2009 13:56:33 +0100 - -t-coffee (8.13-1) unstable; urgency=low - - * New upstream version - - -- Andreas Tille <[email protected]> Thu, 01 Oct 2009 22:13:34 +0200 - -t-coffee (8.06-1) unstable; urgency=low - - [ Charles Plessy ] - TODO: - Identify differences and document relevant ones. - Check that the patch can be dropped. - Support PDB in getdata. - Get the FORTRAN building right. - NOTE - The upstream install system was completely refactored, and T-Coffee - includes new functionalities that require internet access. We have to - understand them before updating our package. - - * New upstream release - - say something about libsoap-lite-perl ? - * debian/control: - - t-coffee recommends libsoap-lite-perl. - - Added missing comma in t-coffee Suggests field (Closes:#536956). - - [ Andreas Tille ] - * debian/control: - - Standards-Version: 3.8.3 (added README.source) - - Added myself to uploaders - - s/Debian-Med/Debian Med/ - - Bumped debhelper version to >= 7.1 to possibly enable short - rules files. - - Added "Depends: ${misc:Depends}" to all packages - - -- Andreas Tille <[email protected]> Fri, 25 Sep 2009 14:41:41 +0200 - -t-coffee (5.72-1) unstable; urgency=low - - [ David Paleino ] - * New upstream release - - [ Charles Plessy ] - * Switched to CDBS. - * debian/patches: - - Upated the dm-coffee patch because dialign-t was renamed dialign-tx. - - Dropped the unicode conversion patch. - - Dropped the manpage patch (implements the clear rule through CDBS). - * Updated my email address. - - -- Charles Plessy <[email protected]> Mon, 30 Jun 2008 23:34:32 +0900 - -t-coffee (5.31-1) unstable; urgency=low - - * New upstream version. - * Debian menu transition: updated debian/t-coffee-doc.doc-base. - * debian/patches/dmcoffee.patch: to make dmcoffee work - out of the box. - * debian/control: - - Allowed Debian Maintainers to upload t-coffee. - - Checked that the package conforms to Policy 3.7.3. - - Using debhelper 5. - - Updated homepage. - - Moved t-coffee-doc to section doc. - * debian/copyright: converted to machine-readable format. - * debian/rules: builds only indep or only arch when called with - binary-indep or binary-arch (Closes: #457921). - - -- Charles Plessy <[email protected]> Sat, 29 Dec 2007 18:54:09 +0100 - -t-coffee (5.05-1) unstable; urgency=low - - * New upstream version. - * Assigned maintainership to Debian-Med. - * Moved boxshade from Recommended to Suggested. - * Added use of quilt. - * Homepage received its separate line. - - -- Steffen Moeller <[email protected]> Mon, 24 Sep 2007 15:05:07 +0200 - -t-coffee (2.50-1) unstable; urgency=low - - * Initial Release (Closes: Bug#205370). - - -- Steffen Moeller <[email protected]> Fri, 13 May 2005 10:52:14 +0200 - Copied: trunk/packages/t-coffee/tags/9.03.r1318-1/debian/changelog (from rev 14157, trunk/packages/t-coffee/trunk/debian/changelog) =================================================================== --- trunk/packages/t-coffee/tags/9.03.r1318-1/debian/changelog (rev 0) +++ trunk/packages/t-coffee/tags/9.03.r1318-1/debian/changelog 2013-07-14 10:26:29 UTC (rev 14158) @@ -0,0 +1,183 @@ +t-coffee (9.03.r1318-1) unstable; urgency=low + + * New upstream release. + + [ Tim Booth ] + * Removed the -doc package as it is empty (Closes: #688630). + docs are no longer in tarball but online: + http://www.tcoffee.org/Projects/tcoffee/#DOCUMENTATION + * Rejigged the rules file to use DH, not CDBS + * Avoid compressing files under t-coffee-examples + * Remove TMalign binary on clean (should avoid building it at all) + * Fix minor typo flagged by Lintian + + [ Charles Plessy ] + * Normalised debian/control with config-model-edit. + * Normalised VCS URLs. + * Using Debhelper 9. + * Complies with Policy 3.9.4. + + [Andreas Tille] + * debian/upstream: Single Reference field instead of Reference-* + + -- Charles Plessy <[email protected]> Sun, 14 Jul 2013 19:03:20 +0900 + +t-coffee (9.02.r1228-2) unstable; urgency=low + + * Recommend tm-align instead of distributing local copy + (debian/control, debian/t-coffee.install, Closes: #661516). + + -- Charles Plessy <[email protected]> Fri, 02 Mar 2012 14:04:20 +0900 + +t-coffee (9.02.r1228-1) unstable; urgency=low + + * New upstream release (Closes: #649263). + * Build new Fortran tool (debian/rules debian/contol debian/t-coffee.install) + * Corrected debian/rules as upstream test suite was removed. + * Complies with Policy 3.9.3 (debian/control, no other changes needed). + * Removed doc-base registrations debian/t-coffee-doc.doc-base.technical and + debian/t-coffee-doc.doc-base.tutorial, as the files disappeared upstream. + + -- Charles Plessy <[email protected]> Mon, 27 Feb 2012 13:09:36 +0900 + +t-coffee (8.99-1) unstable; urgency=low + + * New upstream release in Debian. + * Converted and validated debian/copyright to DEP 5 machine-readable format. + * Using debhelper 8 (debian/control, debian/compat). + * Incremented Standards-Version to reflect conformance with Policy 3.9.2. + (debian/control, no change needed). + * Corrected VCS URLs in debian/control. + * Run upstream tests at build time (debian/rules, debian/README.test). + + -- Charles Plessy <[email protected]> Tue, 21 Jun 2011 14:14:10 +0900 + +t-coffee (8.99-0ubuntu1) lucid; urgency=low + + * Rebuild for new upstream release. + * There is no changelog from upstream to read. + + -- Tim Booth <[email protected]> Sat, 29 Jan 2011 15:18:01 +0000 + +t-coffee (8.97-0ubuntu2) lucid; urgency=low + + * New upstream release, changed watch file and auto rebuild using uupdate + * Cleared out old patch - apparently unneeded or else needs total re-write + + -- Tim Booth <[email protected]> Tue, 23 Nov 2010 14:01:22 +0000 + +t-coffee (8.95-1) lucid; urgency=low + + * New upstream version, rebuild by Tim for Bio-Linux/Lucid + + -- Tim Booth <[email protected]> Mon, 01 Nov 2010 15:05:07 +0000 + +t-coffee (8.84-1) unstable; urgency=low + + * New upstream version + + -- Andreas Tille <[email protected]> Thu, 24 Jun 2010 14:46:16 +0200 + +t-coffee (8.47-1) unstable; urgency=low + + [ Charles Plessy ] + * Collected Upstream information in debian/upstream-metadata.yaml. + + [ Andreas Tille ] + * New upstream version + * Source format 3.0 (quilt) + * Standards-Version: 3.8.4 (no changes needed) + + -- Andreas Tille <[email protected]> Fri, 09 Apr 2010 21:08:32 +0200 + +t-coffee (8.14-1) unstable; urgency=low + + * New upstream version + + -- Andreas Tille <[email protected]> Tue, 03 Nov 2009 13:56:33 +0100 + +t-coffee (8.13-1) unstable; urgency=low + + * New upstream version + + -- Andreas Tille <[email protected]> Thu, 01 Oct 2009 22:13:34 +0200 + +t-coffee (8.06-1) unstable; urgency=low + + [ Charles Plessy ] + TODO: + Identify differences and document relevant ones. + Check that the patch can be dropped. + Support PDB in getdata. + Get the FORTRAN building right. + NOTE + The upstream install system was completely refactored, and T-Coffee + includes new functionalities that require internet access. We have to + understand them before updating our package. + + * New upstream release + - say something about libsoap-lite-perl ? + * debian/control: + - t-coffee recommends libsoap-lite-perl. + - Added missing comma in t-coffee Suggests field (Closes:#536956). + + [ Andreas Tille ] + * debian/control: + - Standards-Version: 3.8.3 (added README.source) + - Added myself to uploaders + - s/Debian-Med/Debian Med/ + - Bumped debhelper version to >= 7.1 to possibly enable short + rules files. + - Added "Depends: ${misc:Depends}" to all packages + + -- Andreas Tille <[email protected]> Fri, 25 Sep 2009 14:41:41 +0200 + +t-coffee (5.72-1) unstable; urgency=low + + [ David Paleino ] + * New upstream release + + [ Charles Plessy ] + * Switched to CDBS. + * debian/patches: + - Upated the dm-coffee patch because dialign-t was renamed dialign-tx. + - Dropped the unicode conversion patch. + - Dropped the manpage patch (implements the clear rule through CDBS). + * Updated my email address. + + -- Charles Plessy <[email protected]> Mon, 30 Jun 2008 23:34:32 +0900 + +t-coffee (5.31-1) unstable; urgency=low + + * New upstream version. + * Debian menu transition: updated debian/t-coffee-doc.doc-base. + * debian/patches/dmcoffee.patch: to make dmcoffee work + out of the box. + * debian/control: + - Allowed Debian Maintainers to upload t-coffee. + - Checked that the package conforms to Policy 3.7.3. + - Using debhelper 5. + - Updated homepage. + - Moved t-coffee-doc to section doc. + * debian/copyright: converted to machine-readable format. + * debian/rules: builds only indep or only arch when called with + binary-indep or binary-arch (Closes: #457921). + + -- Charles Plessy <[email protected]> Sat, 29 Dec 2007 18:54:09 +0100 + +t-coffee (5.05-1) unstable; urgency=low + + * New upstream version. + * Assigned maintainership to Debian-Med. + * Moved boxshade from Recommended to Suggested. + * Added use of quilt. + * Homepage received its separate line. + + -- Steffen Moeller <[email protected]> Mon, 24 Sep 2007 15:05:07 +0200 + +t-coffee (2.50-1) unstable; urgency=low + + * Initial Release (Closes: Bug#205370). + + -- Steffen Moeller <[email protected]> Fri, 13 May 2005 10:52:14 +0200 + Deleted: trunk/packages/t-coffee/tags/9.03.r1318-1/debian/compat =================================================================== --- trunk/packages/t-coffee/trunk/debian/compat 2013-07-13 07:50:35 UTC (rev 14148) +++ trunk/packages/t-coffee/tags/9.03.r1318-1/debian/compat 2013-07-14 10:26:29 UTC (rev 14158) @@ -1 +0,0 @@ -8 Copied: trunk/packages/t-coffee/tags/9.03.r1318-1/debian/compat (from rev 14152, trunk/packages/t-coffee/trunk/debian/compat) =================================================================== --- trunk/packages/t-coffee/tags/9.03.r1318-1/debian/compat (rev 0) +++ trunk/packages/t-coffee/tags/9.03.r1318-1/debian/compat 2013-07-14 10:26:29 UTC (rev 14158) @@ -0,0 +1 @@ +9 Deleted: trunk/packages/t-coffee/tags/9.03.r1318-1/debian/control =================================================================== --- trunk/packages/t-coffee/trunk/debian/control 2013-07-13 07:50:35 UTC (rev 14148) +++ trunk/packages/t-coffee/tags/9.03.r1318-1/debian/control 2013-07-14 10:26:29 UTC (rev 14158) @@ -1,48 +0,0 @@ -Source: t-coffee -Section: science -Priority: optional -Maintainer: Debian Med Packaging Team <[email protected]> -DM-Upload-Allowed: yes -Uploaders: Steffen Moeller <[email protected]>, - Charles Plessy <[email protected]>, - Andreas Tille <[email protected]> -Build-Depends: debhelper (>= 8), gfortran -Standards-Version: 3.9.3 -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/t-coffee/trunk/ -Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/t-coffee/trunk/ -Homepage: http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html - -Package: t-coffee -Architecture: any -Depends: ${shlibs:Depends}, ${misc:Depends} -Recommends: libsoap-lite-perl, libxml-simple-perl, tm-align -Suggests: boxshade, seaview, t-coffee-examples, - dialign-tx, kalign, mafft, muscle, poa, probcons, clustalw, - amap-align, proda -Description: Multiple Sequence Alignment - T-Coffee is a multiple sequence alignment package. Given a set of - sequences (Proteins or DNA), T-Coffee generates a multiple sequence - alignment. Version 2.00 and higher can mix sequences and structures. - . - T-Coffee allows the combination of a collection of multiple/pairwise, - global or local alignments into a single model. It can also - estimate the level of consistency of each position within the new - alignment with the rest of the alignments. See the pre-print for more - information - . - T-Coffee has a special called M-Coffee that makes it possible to combine the - output of many multiple sequence alignment packages. In its published version, - it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and - T-Coffee. A special version has been made for Debian, DM-Coffee, that uses - only free software by replacing Clustal W by Kalign. Using the 8 Methods of - M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite - methods if you prefer. - -Package: t-coffee-examples -Architecture: all -Recommends: t-coffee -Depends: ${misc:Depends} -Description: annotated examples for the use of T-Coffee - To help increasing the proficiency in the use of T-Coffee, this - package provides examples for input sequences and their proper - alignment. Copied: trunk/packages/t-coffee/tags/9.03.r1318-1/debian/control (from rev 14153, trunk/packages/t-coffee/trunk/debian/control) =================================================================== --- trunk/packages/t-coffee/tags/9.03.r1318-1/debian/control (rev 0) +++ trunk/packages/t-coffee/tags/9.03.r1318-1/debian/control 2013-07-14 10:26:29 UTC (rev 14158) @@ -0,0 +1,61 @@ +Source: t-coffee +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Steffen Moeller <[email protected]>, + Charles Plessy <[email protected]>, + Andreas Tille <[email protected]> +Section: science +Priority: optional +Build-Depends: debhelper (>= 9), + gfortran +Standards-Version: 3.9.4 +Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/t-coffee/trunk/ +Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/t-coffee/trunk/ +Homepage: http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html + +Package: t-coffee +Architecture: any +Depends: ${shlibs:Depends}, + ${misc:Depends} +Recommends: libsoap-lite-perl, + libxml-simple-perl, + tm-align +Suggests: boxshade, + seaview, + t-coffee-examples, + dialign-tx, + kalign, + mafft, + muscle, + poa, + probcons, + clustalw, + amap-align, + proda +Description: Multiple Sequence Alignment + T-Coffee is a multiple sequence alignment package. Given a set of + sequences (Proteins or DNA), T-Coffee generates a multiple sequence + alignment. Version 2.00 and higher can mix sequences and structures. + . + T-Coffee allows the combination of a collection of multiple/pairwise, + global or local alignments into a single model. It can also + estimate the level of consistency of each position within the new + alignment with the rest of the alignments. See the pre-print for more + information + . + T-Coffee has a special called M-Coffee that makes it possible to combine the + output of many multiple sequence alignment packages. In its published version, + it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and + T-Coffee. A special version has been made for Debian, DM-Coffee, that uses + only free software by replacing Clustal W by Kalign. Using the 8 Methods of + M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite + methods if you prefer. + +Package: t-coffee-examples +Architecture: all +Depends: ${misc:Depends} +Recommends: t-coffee +Description: annotated examples for the use of T-Coffee + To help increasing the proficiency in the use of T-Coffee, this + package provides examples for input sequences and their proper + alignment. + Deleted: trunk/packages/t-coffee/tags/9.03.r1318-1/debian/copyright =================================================================== --- trunk/packages/t-coffee/trunk/debian/copyright 2013-07-13 07:50:35 UTC (rev 14148) +++ trunk/packages/t-coffee/tags/9.03.r1318-1/debian/copyright 2013-07-14 10:26:29 UTC (rev 14158) @@ -1,33 +0,0 @@ -Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ -Source: http://www.tcoffee.org/Packages/Stable/Latest/T-COFFEE_distribution_Version_9.02.r1228.tar.gz - -Files: * -Copyright: Centre National de la Recherche Scientifique (CNRS) - Cédric Notredame <[email protected]> -License: GPL-2+ - T-COFFEE is free software; you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation; either version 2 of the License, or - (at your option) any later version. - . - T-COFFEE is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - . - You should have received a copy of the GNU General Public License - along with this package; if not, write to the Free Software - Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA -Comment: On Debian systems, the complete text of the GNU General Public - License version 2 can be found in ‘/usr/share/common-licenses/GPL-2’. - -Files: debian/* -Copyright: © 2005-2007 Steffen Möller <[email protected]> - © 2006-2009 Charles Plessy <[email protected]> - © 2008 David Paleino <[email protected]> -License: unknown - Contributions of Charles Plessy and David Paleino are licensed under the same - terms as T-Coffee itself. Redistribution terms for earlier contributions are - unknown. Later contributions are expected to be also under the same terms as - T-Coffee itself. - Copied: trunk/packages/t-coffee/tags/9.03.r1318-1/debian/copyright (from rev 14150, trunk/packages/t-coffee/trunk/debian/copyright) =================================================================== --- trunk/packages/t-coffee/tags/9.03.r1318-1/debian/copyright (rev 0) +++ trunk/packages/t-coffee/tags/9.03.r1318-1/debian/copyright 2013-07-14 10:26:29 UTC (rev 14158) @@ -0,0 +1,33 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Source: http://www.tcoffee.org/Packages/Stable/Latest/T-COFFEE_distribution_Version_9.03.r1318.tar.gz + +Files: * +Copyright: Centre National de la Recherche Scientifique (CNRS) + Cédric Notredame <[email protected]> +License: GPL-2+ + T-COFFEE is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + . + T-COFFEE is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this package; if not, write to the Free Software + Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA +Comment: On Debian systems, the complete text of the GNU General Public + License version 2 can be found in ‘/usr/share/common-licenses/GPL-2’. + +Files: debian/* +Copyright: © 2005-2007 Steffen Möller <[email protected]> + © 2006-2009 Charles Plessy <[email protected]> + © 2008 David Paleino <[email protected]> +License: unknown + Contributions of Charles Plessy and David Paleino are licensed under the same + terms as T-Coffee itself. Redistribution terms for earlier contributions are + unknown. Later contributions are expected to be also under the same terms as + T-Coffee itself. + Deleted: trunk/packages/t-coffee/tags/9.03.r1318-1/debian/patches/probconsrna.patch =================================================================== --- trunk/packages/t-coffee/trunk/debian/patches/probconsrna.patch 2013-07-13 07:50:35 UTC (rev 14148) +++ trunk/packages/t-coffee/tags/9.03.r1318-1/debian/patches/probconsrna.patch 2013-07-14 10:26:29 UTC (rev 14158) @@ -1,11 +0,0 @@ ---- a/t_coffee_source/define_header.h -+++ b/t_coffee_source/define_header.h -@@ -592,7 +592,7 @@ - #define DALILITEc_source "empty" - #define DALILITEc_update_action "never" - #define DALILITEc_mode "expresso,3dcoffee" --#define PROBCONSRNA_4_TCOFFEE "probconsRNA" -+#define PROBCONSRNA_4_TCOFFEE "probcons-RNA" - #define PROBCONSRNA_type "RNA_multiple_aligner" - #define PROBCONSRNA_ADDRESS "http://probcons.stanford.edu/"; - #define PROBCONSRNA_language "C++" Copied: trunk/packages/t-coffee/tags/9.03.r1318-1/debian/patches/probconsrna.patch (from rev 14155, trunk/packages/t-coffee/trunk/debian/patches/probconsrna.patch) =================================================================== --- trunk/packages/t-coffee/tags/9.03.r1318-1/debian/patches/probconsrna.patch (rev 0) +++ trunk/packages/t-coffee/tags/9.03.r1318-1/debian/patches/probconsrna.patch 2013-07-14 10:26:29 UTC (rev 14158) @@ -0,0 +1,14 @@ +Description: Debian-specific adjustment. + The program "probconsRNA" is called "probcons-RNA" in Debian. +Forwarded: not-needed +--- a/t_coffee_source/define_header.h ++++ b/t_coffee_source/define_header.h +@@ -592,7 +592,7 @@ + #define DALILITEc_source "empty" + #define DALILITEc_update_action "never" + #define DALILITEc_mode "expresso,3dcoffee" +-#define PROBCONSRNA_4_TCOFFEE "probconsRNA" ++#define PROBCONSRNA_4_TCOFFEE "probcons-RNA" + #define PROBCONSRNA_type "RNA_multiple_aligner" + #define PROBCONSRNA_ADDRESS "http://probcons.stanford.edu/"; + #define PROBCONSRNA_language "C++" _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
