Andreas Tille pushed to branch master at Debian Med / unifrac-tools
Commits: a8700f8f by Andreas Tille at 2026-07-01T07:08:04+02:00 Merge changelog paragraphs - - - - - 6295f42c by Andreas Tille at 2026-07-01T09:12:37+02:00 Do not explicitly specify -noshlib - - - - - 3 changed files: - debian/changelog - debian/control - debian/patches/enable_linking_to_shared_hdf5_lib.patch Changes: ===================================== debian/changelog ===================================== @@ -7,15 +7,13 @@ unifrac-tools (1.6.1-1) UNRELEASED; urgency=medium * Reflow Uploaders field (cme) * Remove Priority field (cme) * Drop 'Rules-Requires-Root: no' from d/control (routine-update) - TODO: https://github.com/scikit-bio/scikit-bio-binaries + * Build-Depends: libskbb-dev + * Reformat the Last-Update date as ISO YYYY-MM-DD. [ Gilles Filippini ] * Fix FTBFS against HDF5 2.1.0 Closes: #1139615 - [ Andreas Tille ] - * Reformat the Last-Update date as ISO YYYY-MM-DD. - -- Andreas Tille <[email protected]> Tue, 16 Jun 2026 22:24:42 +0200 unifrac-tools (1.4-3) unstable; urgency=medium ===================================== debian/control ===================================== @@ -14,6 +14,7 @@ Build-Depends: liblz4-dev, libblas-dev, liblapacke-dev, + libskbb-dev, chrpath, gfortran, python3 <!nocheck>, ===================================== debian/patches/enable_linking_to_shared_hdf5_lib.patch ===================================== @@ -2,7 +2,7 @@ From: [email protected] (Aaron M. Ucko) Andreas Tille <[email protected]> Date: 2026-06-17 Origin: https://lists.debian.org/debian-med/2022/07/msg00078.html -Description: Enable linking ro shared hdf5 library +Description: Enable linking to shared hdf5 library Forwarded: not-needed FIXME: Aaron, please review the changes @@ -21,7 +21,7 @@ FIXME: Aaron, please review the changes lib$(SSU).so: tree.o biom.o biom_inmem.o biom_subsampled.o tsv.o unifrac.o cmd.o skbio_alt.o api.o $(UNIFRAC_FILES) # h5c++ $(LDDFLAGS) -o lib$(SSU).so tree.o biom.o biom_inmem.o biom_subsampled.o tsv.o $(UNIFRAC_FILES) unifrac.o cmd.o skbio_alt.o api.o -lc -llz4 $(SKBBLIB) -L$(PREFIX)/lib -noshlib -lhdf5_cpp -lhdf5_hl_cpp -lhdf5_hl -lhdf5 - h5c++ $(LDDFLAGS) -o lib$(SSU).so.0 tree.o biom.o biom_inmem.o biom_subsampled.o tsv.o $(UNIFRAC_FILES) unifrac.o cmd.o skbio_alt.o api.o -lc -llz4 -shlib -Wl,-soname,lib$(SSU).so.0 $(SKBBLIB) -L$(PREFIX)/lib -noshlib -lhdf5_cpp -lhdf5_hl_cpp -lhdf5_hl -lhdf5 -+ h5c++ $(LDDFLAGS) -o lib$(SSU).so.0 tree.o biom.o biom_inmem.o biom_subsampled.o tsv.o $(UNIFRAC_FILES) unifrac.o cmd.o skbio_alt.o api.o -lc -llz4 -Wl,-soname,lib$(SSU).so.0 $(SKBBLIB) -L$(PREFIX)/lib -noshlib -lhdf5_cpp -lhdf5_hl_cpp -lhdf5_hl -lhdf5 ++ h5c++ $(LDDFLAGS) -o lib$(SSU).so.0 tree.o biom.o biom_inmem.o biom_subsampled.o tsv.o $(UNIFRAC_FILES) unifrac.o cmd.o skbio_alt.o api.o -lc -llz4 -Wl,-soname,lib$(SSU).so.0 $(SKBBLIB) -L$(PREFIX)/lib -lhdf5_cpp -lhdf5_hl_cpp -lhdf5_hl -lhdf5 ln -sf lib$(SSU).so.0 lib$(SSU).so # FIXME: Should build static lib as well # $(CXX) $(LDDFLAGS) -o libssu.a tree.o biom.o biom_inmem.o biom_subsampled.o tsv.o $(UNIFRAC_FILES) unifrac.o cmd.o skbio_alt.o api.o -lc -lhdf5_cpp -llz4 $(BLASLIB) -L$(PREFIX)/lib View it on GitLab: https://salsa.debian.org/med-team/unifrac-tools/-/compare/65ac418aae895faafe1ec1a7d25af50caa58caf4...6295f42c390df38d1598576dc91ef4c4b12c5c5b -- View it on GitLab: https://salsa.debian.org/med-team/unifrac-tools/-/compare/65ac418aae895faafe1ec1a7d25af50caa58caf4...6295f42c390df38d1598576dc91ef4c4b12c5c5b You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help
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