Andreas Tille pushed to branch master at Debian Med / aevol
Commits: 53cf32e3 by Andreas Tille at 2026-05-25T00:00:56+02:00 New upstream version - - - - - 07bfab75 by Andreas Tille at 2026-05-25T00:00:57+02:00 New upstream version 9.4.0 - - - - - 41f503a2 by Andreas Tille at 2026-05-25T00:00:58+02:00 Update upstream source from tag 'upstream/9.4.0' Update to upstream version '9.4.0' with Debian dir 478269deb2c45ca7dc9a609a1e031b9f6cc491d7 - - - - - d57e5d1e by Andreas Tille at 2026-05-24T23:01:13+01:00 Set upstream metadata fields: Repository, Repository-Browse. Changes-By: lintian-brush Fixes: lintian: source: upstream-metadata-missing-repository [debian/upstream/metadata] See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html - - - - - ec19e587 by Andreas Tille at 2026-05-25T00:02:40+02:00 Refresh patch - - - - - 4e0dfbcc by Andreas Tille at 2026-05-25T07:02:59+02:00 Build-Depends: libgmock-dev * Build-Depends: libgmock-dev * Add nocheck profile for build time test dependencies - - - - - 8bbe5c8d by Andreas Tille at 2026-05-25T07:44:52+02:00 Upload to unstable - - - - - 96 changed files: - .clang-format - CMakeLists.txt - debian/changelog - debian/control - debian/patches/use_debian_packaged_libs.patch - debian/upstream/metadata - examples/basic/param.in - examples/eukaryote/param.in - examples/virus/param.in - src/aevol_create.cpp - src/aevol_run.cpp - src/libaevol/CMakeLists.txt - src/libaevol/ExpSetup.cpp - src/libaevol/ExpSetup.h - src/libaevol/ae_types.h - src/libaevol/aevol.h - src/libaevol/biochemistry/AnnotatedChromosome.cpp - src/libaevol/biochemistry/Dna.cpp - src/libaevol/biochemistry/PromoterList.cpp - src/libaevol/biochemistry/Protein.cpp - src/libaevol/biochemistry/Protein.h - src/libaevol/biochemistry/Rna.cpp - src/libaevol/biochemistry/Rna.h - src/libaevol/biochemistry/mutations/mutators/DnaMutator.cpp - + src/libaevol/io/gff3/Feature.cpp - + src/libaevol/io/gff3/Feature.h - + src/libaevol/io/gff3/FeatureType.h - + src/libaevol/io/gff3/GFF3Writer.cpp - + src/libaevol/io/gff3/GFF3Writer.h - + src/libaevol/io/gff3/RegionHandler.cpp - + src/libaevol/io/gff3/RegionHandler.h - src/libaevol/io/parameters/ParamReader.cpp - src/libaevol/io/parameters/ParamReader.h - src/libaevol/io/parameters/ParamValues.cpp - src/libaevol/io/parameters/ParamValues.h - src/libaevol/io/tree/ReplicationReport.cpp - src/libaevol/io/ui/UserInterfaceOutput.cpp - src/libaevol/orchestration/CheckpointExplorer.cpp - src/libaevol/orchestration/EvolutionRunner.cpp - src/libaevol/orchestration/ExperimentCreator.cpp - src/libaevol/orchestration/IndividualAnalyser.cpp - src/libaevol/phenotype/Gaussian.h - src/libaevol/phenotype/PhenotypicTarget.cpp - src/libaevol/phenotype/PhenotypicTarget.h - + src/libaevol/phenotype/PhenotypicTargetConstituent.cpp - + src/libaevol/phenotype/PhenotypicTargetConstituent.h - + src/libaevol/phenotype/Triangle.h - src/libaevol/phenotype/fuzzy/FuzzyFactory.h - src/libaevol/population/Grid.cpp - src/libaevol/population/Grid.h - src/libaevol/population/Individual.cpp - src/libaevol/population/Individual.h - + src/libaevol/population/selection/Selection.cpp - src/libaevol/population/Selection.h → src/libaevol/population/selection/Selection.h - src/libaevol/population/SelectionParams.cpp → src/libaevol/population/selection/SelectionParams.cpp - src/libaevol/population/SelectionParams.h → src/libaevol/population/selection/SelectionParams.h - src/libaevol/population/SelectionScheme.h → src/libaevol/population/selection/SelectionScheme.h - src/libaevol/population/SelectionScope.h → src/libaevol/population/selection/SelectionScope.h - + src/libaevol/population/selection/Selection_Asexual.cpp - src/libaevol/population/Selection.cpp → src/libaevol/population/selection/Selection_Sexual.cpp - src/libaevol/rng/JumpingMT.h - src/post_treatments/extract_genomes.cpp - src/post_treatments/mutagenesis.cpp - src/post_treatments/replicative_robustness.cpp - + test/ctest/params_rel_dosage_effect.in - test/ctest/test_aevol_eukaryote_2b_run_wt_wt0/params.in - test/ctest/test_aevol_run_reprod_dire/params.in - test/ctest/test_ancestor_robustness.sh - test/ctest/test_ancstats.sh - test/ctest/test_create.sh - test/ctest/test_extract.sh - test/ctest/test_extract_genomes.sh - test/ctest/test_lineage.sh - test/ctest/test_run_init.sh - test/ctest/test_run_reprod.sh - test/ctest/test_run_wt.sh - test/gtest/CMakeLists.txt - test/gtest/DiscreteDoubleFuzzyTest.cpp - test/gtest/DnaTest.cpp - test/gtest/Dna_4bTest.cpp - test/gtest/EukIndividualTest.cpp - test/gtest/EukTest_mutations.cpp - test/gtest/EukTest_nornas.cpp - test/gtest/EukTest_withrnas.cpp - test/gtest/Folding4bTest.cpp - + test/gtest/GFF3Test.cpp - + test/gtest/ParamReaderTest.cpp - + test/gtest/SelectionTest.cpp - + test/gtest/gtest_utils.h - test/gtest/test_data/generate_data.sh - + test/gtest/test_data/gff/4b_ref.gff - + test/gtest/test_data/gff/euk_ref.gff - test/gtest/test_data/ckpts/ckpt/README.md → test/gtest/test_data/mini_run/ckpts/ckpt/README.md - test/gtest/test_data/ckpts/custom_ckpt/README.md → test/gtest/test_data/mini_run/ckpts/custom_ckpt/README.md - test/gtest/test_data/params.in → test/gtest/test_data/mini_run/params.in - + test/gtest/test_data/param_files/test_params The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/aevol/-/compare/eaed4e4d04fe6e381b472b2c39c1bea13d661c33...8bbe5c8d0e81500fee28ed8d13072d6ae08a4b21 -- View it on GitLab: https://salsa.debian.org/med-team/aevol/-/compare/eaed4e4d04fe6e381b472b2c39c1bea13d661c33...8bbe5c8d0e81500fee28ed8d13072d6ae08a4b21 You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help
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