Andreas Tille pushed to branch master at Debian Med / kallisto
Commits: 17ac8fdc by Andreas Tille at 2026-05-23T07:13:41+02:00 d/rules: Remove core dump from failed test to not make it into the resulting package. The proper fix would certainly be to fix the test!) - - - - - 2 changed files: - debian/changelog - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -6,6 +6,8 @@ kallisto (0.51.1+dfsg-2) UNRELEASED; urgency=medium [ Andreas Tille ] * Update standards version to 4.7.4, no changes needed. + * d/rules: Remove core dump from failed test to not make it into the + resulting package. The proper fix would certainly be to fix the test!) -- Andreas Tille <[email protected]> Fri, 22 May 2026 22:24:48 +0200 ===================================== debian/rules ===================================== @@ -23,3 +23,9 @@ override_dh_auto_test: cd test && PATH=$$(find ../obj-* -name src):$(PATH) HOME=$$(mktemp --directory) XDG_CACHE_HOME=$(mktemp --directory) snakemake --cores 1 || true rm -rf test/.snakemake test/bus_out test/quant_out/run_info.json test/transcripts.kidx.gz \ test/quant_out test/transcripts.kidx + # FIXME: + # ./src/kallisto quant -o ./func_tests/quantbasic -i ./func_tests/basic7.idx --single -l 5 -s 2 ./func_tests/small.fastq.gz + # ./func_tests/runtests.sh: line 12: 299146 Segmentation fault (core dumped) ./src/kallisto quant -o ./func_tests/quantbasic -i ./func_tests/basic7.idx --single -l 5 -s 2 ./func_tests/small.fastq.gz 2> /dev/null > /dev/null + #[Failed] + # This might leave a core file which should at least be removed to not make it into the final package + find . -name 'core' -o -name 'core.[0-9]*' | xargs rm -f View it on GitLab: https://salsa.debian.org/med-team/kallisto/-/commit/17ac8fdcb7745928bc7d3c174c358320725fa762 -- View it on GitLab: https://salsa.debian.org/med-team/kallisto/-/commit/17ac8fdcb7745928bc7d3c174c358320725fa762 You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help
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