Andreas Tille pushed to branch master at Debian Med / kallisto
Commits: 06007302 by Andreas Tille at 2026-05-23T05:44:01+01:00 Update standards version to 4.7.4, no changes needed. Upgrade checklist verified: 4.7.3 → 4.7.4: * Package is not in non-free-firmware Changes-By: lintian-brush Fixes: lintian: source: out-of-date-standards-version 4.7.3 (released 2025-12-23) (current is 4.7.4.1) See-also: https://lintian.debian.org/tags/out-of-date-standards-version.html - - - - - cd4769a5 by Andreas Tille at 2026-05-23T07:01:09+02:00 d/rules: Remove core dump from failed test to not make it into the resulting package. The proper fix would certainly be to fix the test!) - - - - - 3 changed files: - debian/changelog - debian/control - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -4,6 +4,11 @@ kallisto (0.51.1+dfsg-2) UNRELEASED; urgency=medium * Do not build with -march=native Closes: #1128956 + [ Andreas Tille ] + * Update standards version to 4.7.4, no changes needed. + * d/rules: Remove core dump from failed test to not make it into the + resulting package. The proper fix would certainly be to fix the test!) + -- Andreas Tille <[email protected]> Fri, 22 May 2026 22:24:48 +0200 kallisto (0.51.1+dfsg-1) unstable; urgency=medium ===================================== debian/control ===================================== @@ -1,5 +1,5 @@ Source: kallisto -Standards-Version: 4.7.3 +Standards-Version: 4.7.4 Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Andreas Tille <[email protected]>, ===================================== debian/rules ===================================== @@ -23,3 +23,9 @@ override_dh_auto_test: cd test && PATH=$$(find ../obj-* -name src):$(PATH) HOME=$$(mktemp --directory) XDG_CACHE_HOME=$(mktemp --directory) snakemake --cores 1 || true rm -rf test/.snakemake test/bus_out test/quant_out/run_info.json test/transcripts.kidx.gz \ test/quant_out test/transcripts.kidx + # FIXME: + # ./src/kallisto quant -o ./func_tests/quantbasic -i ./func_tests/basic7.idx --single -l 5 -s 2 ./func_tests/small.fastq.gz + # ./func_tests/runtests.sh: line 12: 299146 Segmentation fault (core dumped) ./src/kallisto quant -o ./func_tests/quantbasic -i ./func_tests/basic7.idx --single -l 5 -s 2 ./func_tests/small.fastq.gz 2> /dev/null > /dev/null + #[Failed] + # This might leave a core file which should at least be removed to not make it into the final package + find . -name core --delete View it on GitLab: https://salsa.debian.org/med-team/kallisto/-/compare/919b8d139f02be7e4c7da2b1c7f36ec3895b5bb5...cd4769a5bda571b3e9cca131720f1e8f95e583bb -- View it on GitLab: https://salsa.debian.org/med-team/kallisto/-/compare/919b8d139f02be7e4c7da2b1c7f36ec3895b5bb5...cd4769a5bda571b3e9cca131720f1e8f95e583bb You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help
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