Steven Robbins pushed to branch master at Debian Med / libminc


Commits:
c46109d3 by Steve Robbins at 2026-05-03T20:36:32-05:00
New upstream version

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223485f7 by Steve Robbins at 2026-05-03T20:36:33-05:00
New upstream version 2.5.0
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6e105cc9 by Steve Robbins at 2026-05-03T20:36:34-05:00
Update upstream source from tag 'upstream/2.5.0'

Update to upstream version '2.5.0'
with Debian dir 01a4b01993a6663ad1bfa0ead83d5190101a7057
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e78480f7 by Steve Robbins at 2026-05-03T20:36:34-05:00
Standards-Version: 4.7.4 (routine-update)

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d9422e18 by Steve Robbins at 2026-05-03T20:36:39-05:00
debputy lint --auto-fix (routine-update)

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f269fcc2 by Steve Robbins at 2026-05-06T21:31:04-05:00
Refresh patches

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7f2d41f0 by Steve Robbins at 2026-05-06T22:11:09-05:00
rename symbol file to match renamed package

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195 changed files:

- .github/workflows/cmake.yml
- + AGENTS.md
- CMakeLists.txt
- CTestConfig.cmake
- LIBMINCConfig.cmake.in
- UseLIBMINC.cmake.in
- cmake-modules/BuildHDF5.cmake
- cmake-modules/BuildNETCDF.cmake
- cmake-modules/BuildNIFTI.cmake
- cmake-modules/FindNETCDF.cmake
- cmake-modules/FindNIFTI.cmake
- config.h.cmake
- debian/changelog
- debian/control
- debian/libminc2.symbols → debian/libminc2-5.3.0t64.symbols
- debian/patches/0002-initialize_arrays_in_tests.patch
- debian/patches/0004-Fix-setting-of-LIBMINC_USE_FILE_CONFIG-to-be-correct.patch
- debian/patches/0005-Disable-setting-RPATH.patch
- debian/patches/series
- ezminc/CMakeLists.txt
- ezminc/examples/CMakeLists.txt
- ezminc/examples/Example_CMakeLists.txt
- ezminc/examples/create_grid_file.cpp
- ezminc/examples/trilinear_resample.cpp
- ezminc/examples/volume_avg.cpp
- ezminc/examples/volume_msq_dist.cpp
- ezminc/minc_1_rw.cpp
- ezminc/minc_1_rw.h
- ezminc/minc_1_simple.h
- ezminc/minc_1_simple_rw.cpp
- ezminc/minc_1_simple_rw.h
- ezminc/minc_io_4d_volume.h
- ezminc/minc_io_exceptions.h
- ezminc/minc_io_fixed_vector.h
- ezminc/minc_io_simple_volume.h
- ezminc/tests/CMakeLists.txt
- ezminc/tests/ezminc_rw_test.cpp
- ezminc/tests/ezminc_stats.cpp
- ezminc/tests/minc_rw_test2.cpp
- ezminc/tests/minc_rw_test_4d.cpp
- ezminc/tests/minc_rw_test_simple.cpp
- libcommon/ParseArgv.c
- libcommon/ParseArgv.h
- libcommon/minc2_error.h
- libcommon/minc_common_defs.h
- libcommon/minc_config.c
- libcommon/minc_config.h
- libcommon/minc_error.c
- libcommon/minc_error.h
- libcommon/read_file_names.c
- libcommon/read_file_names.h
- libcommon/restructure.h
- libcommon/time_stamp.c
- libcommon/time_stamp.h
- libsrc/dim_conversion.c
- libsrc/hdf_convenience.c
- libsrc/hdf_convenience.h
- libsrc/image_conversion.c
- libsrc/minc.h
- libsrc/minc_basic.h
- libsrc/minc_compat.c
- libsrc/minc_compat.h
- libsrc/minc_convenience.c
- libsrc/minc_format_convert.c
- libsrc/minc_format_convert.h
- libsrc/minc_private.h
- libsrc/minc_routines.h
- libsrc/minc_simple.c
- libsrc/minc_simple.h
- libsrc/minc_structures.h
- libsrc/minc_useful.h
- libsrc/minc_varlists.h
- libsrc/nd_loop.c
- libsrc/nd_loop.h
- libsrc/netcdf_convenience.c
- libsrc/strdup.c
- libsrc/type_limits.h
- libsrc/value_conversion.c
- libsrc/voxel_loop.c
- libsrc/voxel_loop.h
- libsrc2/convert.c
- libsrc2/dimension.c
- libsrc2/grpattr.c
- libsrc2/hyper.c
- libsrc2/label.c
- libsrc2/m2util.c
- libsrc2/minc2.h
- libsrc2/minc2_api.h
- libsrc2/minc2_private.h
- libsrc2/minc2_structs.h
- libsrc2/minc_compat2.h
- libsrc2/record.c
- libsrc2/valid.c
- libsrc2/volprops.c
- libsrc2/volume.c
- + testdir/4d_dot.mnc
- testdir/CMakeLists.txt
- testdir/icv.c
- testdir/icv_dim.c
- testdir/icv_dim1.c
- testdir/icv_fillvalue.c
- testdir/icv_range.c
- testdir/icv_vec.c
- testdir/minc.c
- testdir/minc2-convert-test.c
- testdir/minc2-create-test-images-2.c
- testdir/minc2-create-test-images.c
- testdir/minc2-datatype-test.c
- testdir/minc2-dimension-test.c
- testdir/minc2-float-voxel-test.c
- testdir/minc2-full-test.c
- testdir/minc2-grpattr-test.c
- testdir/minc2-hyper-test-2.c
- testdir/minc2-hyper-test.c
- testdir/minc2-label-test.c
- testdir/minc2-large-attribute.c
- testdir/minc2-leak-test.c
- testdir/minc2-m2stats.c
- testdir/minc2-multires-test.c
- testdir/minc2-read-metadata.c
- testdir/minc2-read-rgb.c
- + testdir/minc2-read-variable.c
- testdir/minc2-record-test.c
- + testdir/minc2-scalar-test.c
- testdir/minc2-testminctools.sh
- testdir/minc2-valid-test.c
- testdir/minc2-vector_dimension-test.c
- testdir/minc2-volprops-test.c
- testdir/minc_conversion.c
- testdir/minc_long_attr.c
- testdir/minc_types.c
- testdir/mincapi.c
- testdir/multidim_test.c
- testdir/test_arg_parse.c
- testdir/test_speed.c
- testdir/test_xfm.c
- testdir/vio_xfm_test/copy-xfm.c
- testdir/vio_xfm_test/example_volume_io.c
- testdir/vio_xfm_test/test-xfm.c
- testdir/vio_xfm_test/verify_xfm.c
- testdir/volume_test.c
- volume_io/Geometry/colour.c
- volume_io/Geometry/colour_def.c
- volume_io/Geometry/gaussian.c
- volume_io/Geometry/inverse.c
- volume_io/Geometry/newton.c
- volume_io/Geometry/points.c
- volume_io/Geometry/splines.c
- volume_io/Geometry/tensors.c
- volume_io/Geometry/transforms.c
- volume_io/Include/volume_io.h
- volume_io/Include/volume_io/alloc.h
- volume_io/Include/volume_io/arrays.h
- volume_io/Include/volume_io/basic.h
- volume_io/Include/volume_io/files.h
- volume_io/Include/volume_io/geom_structs.h
- volume_io/Include/volume_io/geometry.h
- volume_io/Include/volume_io/multidim.h
- volume_io/Include/volume_io/progress.h
- volume_io/Include/volume_io/string_funcs.h
- volume_io/Include/volume_io/transforms.h
- volume_io/Include/volume_io/vol_io_prototypes.h
- volume_io/Include/volume_io/volume.h
- volume_io/Include/volume_io/volume_cache.h
- volume_io/MNI_formats/gen_xf_io.c
- volume_io/MNI_formats/gen_xfs.c
- volume_io/MNI_formats/grid_transforms.c
- volume_io/MNI_formats/mni_io.c
- volume_io/MNI_formats/tag_points.c
- volume_io/MNI_formats/thin_plate_spline.c
- volume_io/Prog_utils/alloc.c
- volume_io/Prog_utils/alloc_check.c
- volume_io/Prog_utils/arrays.c
- volume_io/Prog_utils/files.c
- volume_io/Prog_utils/print.c
- volume_io/Prog_utils/progress.c
- volume_io/Prog_utils/string.c
- volume_io/Prog_utils/time.c
- volume_io/Volumes/evaluate.c
- volume_io/Volumes/get_hyperslab.c
- volume_io/Volumes/input_free.c
- volume_io/Volumes/input_mgh.c
- volume_io/Volumes/input_mgh.h
- volume_io/Volumes/input_mnc.c
- volume_io/Volumes/input_mnc2.c
- volume_io/Volumes/input_nifti.h
- volume_io/Volumes/input_nrrd.c
- volume_io/Volumes/input_nrrd.h
- volume_io/Volumes/input_volume.c
- volume_io/Volumes/multidim_arrays.c
- volume_io/Volumes/output_mnc.c
- volume_io/Volumes/output_mnc2.c
- volume_io/Volumes/output_volume.c
- volume_io/Volumes/volume_cache.c
- volume_io/Volumes/volumes.c


The diff was not included because it is too large.


View it on GitLab: 
https://salsa.debian.org/med-team/libminc/-/compare/fb542773b3430760d763f92195daaf396f0b943c...7f2d41f0a1e369b7118fcffcbe703d34d1d636d5

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View it on GitLab: 
https://salsa.debian.org/med-team/libminc/-/compare/fb542773b3430760d763f92195daaf396f0b943c...7f2d41f0a1e369b7118fcffcbe703d34d1d636d5
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