Michael R. Crusoe pushed to branch master at Debian Med / transdecoder
Commits: d7514718 by Michael R. Crusoe at 2026-05-01T13:11:51+02:00 New upstream version - - - - - ba94bab7 by Michael R. Crusoe at 2026-05-01T13:11:52+02:00 New upstream version 6.0.0 - - - - - 56b78753 by Michael R. Crusoe at 2026-05-01T13:12:08+02:00 Update upstream source from tag 'upstream/6.0.0' Update to upstream version '6.0.0' with Debian dir a0015ad9ff2deb2726a415273737dd76cb565322 - - - - - 697416b8 by Michael R. Crusoe at 2026-05-01T13:12:08+02:00 Standards-Version: 4.7.4 (routine-update) - - - - - 54e70f03 by Michael R. Crusoe at 2026-05-01T13:14:03+02:00 debputy lint --auto-fix (routine-update) - - - - - 92b1345f by Michael R. Crusoe at 2026-05-01T13:16:17+02:00 Removed 2 patches applied upstream. - - - - - e463afb9 by Michael R. Crusoe at 2026-05-01T12:16:37+01:00 Set upstream metadata fields: Bug-Database, Repository, Repository-Browse. Changes-By: lintian-brush Fixes: lintian: upstream-metadata-missing-repository See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html - - - - - 2f56034c by Michael R. Crusoe at 2026-05-01T14:23:01+02:00 d/{tests/,}control: new dependency: diamond-aligner - - - - - ff037043 by Michael R. Crusoe at 2026-05-01T18:16:30+02:00 d/rules: more comprehensively remove errant execute bits. - - - - - 5d0edb39 by Michael R. Crusoe at 2026-05-01T18:16:30+02:00 d/tests/control: remove skip-not-installable and make explicit where we test (limited by hmmer): arm64, amd64, & i386. - - - - - d877b672 by Michael R. Crusoe at 2026-05-01T18:16:30+02:00 Create manual pages. - - - - - 5fe35233 by Michael R. Crusoe at 2026-05-01T18:17:01+02:00 release to unstable - - - - - 36 changed files: - Changelog.txt - Docker/Dockerfile - Docker/VERSION.txt - Docker/make_simg.sh - PerlLib/DelimParser.pm - PerlLib/GFF3_utils2.pm - PerlLib/GTF.pm - PerlLib/GTF_utils2.pm - PerlLib/PWM.pm - PerlLib/Pipeliner.pm - README.md - + TransDecoder - debian/changelog - debian/control - − debian/createmanpages - − debian/patches/2to3.patch - debian/patches/series - − debian/patches/test_path.patch - debian/rules - debian/tests/control - debian/transdecoder.links - + debian/transdecoder.manpages - debian/upstream/metadata - sample_data/cufflinks_example/runMe.sh - sample_data/pasa_example/runMe.sh - sample_data/simple_transcriptome_target/runMe.Docker.sh - sample_data/simple_transcriptome_target/runMe.sh - sample_data/stringtie_example/runMe.sh - sample_data/supertranscripts_example/runMe.sh - TransDecoder.LongOrfs → util/TransDecoder.LongOrfs - TransDecoder.Predict → util/TransDecoder.Predict - util/gff3_file_to_bed.pl - util/gtf_genome_to_cdna_fasta.pl - util/misc/get_FP_FN_scores.py - util/misc/plot_indiv_seq_likelihood_profile.py - util/misc/select_TD_orfs.py The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/transdecoder/-/compare/e2fc450c1def6ca8450b083fc50c71ba713740f3...5fe35233d5b1c09880d1cc457f1b061b7b1765c6 -- View it on GitLab: https://salsa.debian.org/med-team/transdecoder/-/compare/e2fc450c1def6ca8450b083fc50c71ba713740f3...5fe35233d5b1c09880d1cc457f1b061b7b1765c6 You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help
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