Michael R. Crusoe pushed to branch master at Debian Med / libwfa2
Commits: 60813e9a by Michael R. Crusoe at 2026-04-30T09:14:17+02:00 New upstream version - - - - - 89967301 by Michael R. Crusoe at 2026-04-30T09:14:19+02:00 New upstream version 2.3.6 - - - - - 0efbbf96 by Michael R. Crusoe at 2026-04-30T09:15:30+02:00 Update upstream source from tag 'upstream/2.3.6' Update to upstream version '2.3.6' with Debian dir 7fcae427ba034fa84b49f0f8f367ee3fc6173d85 - - - - - 5d2303b5 by Michael R. Crusoe at 2026-04-30T09:15:31+02:00 Standards-Version: 4.7.4 (routine-update) - - - - - 59976cd3 by Michael R. Crusoe at 2026-04-30T09:17:35+02:00 debputy lint --auto-fix (routine-update) - - - - - 64e25353 by Michael R. Crusoe at 2026-04-30T09:19:24+02:00 d/patches: gcc-13 patch was applied upstream, removing. - - - - - da8c132c by Michael R. Crusoe at 2026-04-30T09:31:26+02:00 d/upstream/metadata: add citations - - - - - b73d63da by Michael R. Crusoe at 2026-04-30T15:04:58+02:00 d/control: add the 'time' package for the tests - - - - - d2336fdb by Michael R. Crusoe at 2026-04-30T15:10:56+02:00 install the new pkgconfig files - - - - - f6d6fab2 by Michael R. Crusoe at 2026-04-30T15:18:18+02:00 d/watch: upgrade to syntax version 5 - - - - - c09d1ddb by Michael R. Crusoe at 2026-04-30T16:41:43+02:00 Use the built-in tests as autopkgtests. - - - - - 4c9018d9 by Michael R. Crusoe at 2026-04-30T16:41:43+02:00 Release to unstable - - - - - 116 changed files: - + .github/workflows/make.yml - .gitignore - CMakeLists.txt - Makefile - README.md - − VERSION - + VERSION.txt - alignment/Makefile - alignment/cigar.c - alignment/cigar.h - + alignment/cigar_utils.c - utils/string_padded.h → alignment/cigar_utils.h - alignment/score_matrix.c - bindings/cpp/WFAligner.cpp - bindings/cpp/WFAligner.hpp - debian/changelog - debian/clean - debian/control - debian/libwfa2-0.install - debian/libwfa2-dev.install - − debian/patches/gcc-13.patch - + debian/patches/install-test - debian/patches/series - debian/rules - + debian/tests/control - + debian/tests/run-unit-test - debian/upstream/metadata - debian/watch - examples/Makefile - examples/wfa_basic.c - examples/wfa_bindings.cpp - examples/wfa_lambda.cpp - guix.scm - + img/wfa.endsfree.png - + libwfa2.pc.in - scripts/wfa.alg.cmp.score.sh - system/mm_allocator.c - system/mm_allocator.h - system/mm_stack.c - system/profiler_counter.h - system/profiler_timer.h - tests/wfa.utest.check/wfa.utest.log - tests/wfa.utest.check/wfa.utest.log.mem - tests/wfa.utest.check/wfa.utest.log.time - + tests/wfa.utest.clean.sh - tests/wfa.utest.cmp.sh - − tests/wfa.utest.performance.cmp.sh - tests/wfa.utest.performance.sh - tests/wfa.utest.sh - tests/wfa.utest.valgrind.sh - tools/README.md - tools/align_benchmark/Makefile - tools/align_benchmark/align_benchmark.c - tools/align_benchmark/align_benchmark_params.c - tools/align_benchmark/align_benchmark_params.h - tools/align_benchmark/benchmark/benchmark_check.c - tools/align_benchmark/benchmark/benchmark_edit.c - tools/align_benchmark/benchmark/benchmark_gap_affine.c - tools/align_benchmark/benchmark/benchmark_gap_affine2p.c - tools/align_benchmark/benchmark/benchmark_gap_linear.c - tools/align_benchmark/benchmark/benchmark_indel.c - tools/align_benchmark/benchmark/benchmark_utils.c - tools/align_benchmark/benchmark/benchmark_utils.h - tools/align_benchmark/edit/edit_bpm.c - tools/align_benchmark/gap_affine2p/affine2p_matrix.h - tools/generate_dataset/generate_dataset.c - utils/Makefile - utils/commons.h - utils/heatmap.h - − utils/string_padded.c - utils/vector.h - wavefront/Makefile - wavefront/wavefront_align.c - wavefront/wavefront_align.h - wavefront/wavefront_aligner.c - wavefront/wavefront_aligner.h - wavefront/wavefront_attributes.c - wavefront/wavefront_attributes.h - wavefront/wavefront_backtrace.c - wavefront/wavefront_backtrace_buffer.c - wavefront/wavefront_backtrace_buffer.h - wavefront/wavefront_backtrace_offload.c - wavefront/wavefront_bialign.c - wavefront/wavefront_bialign.h - wavefront/wavefront_bialigner.c - wavefront/wavefront_bialigner.h - wavefront/wavefront_compute.c - wavefront/wavefront_compute_affine.c - wavefront/wavefront_compute_affine2p.c - wavefront/wavefront_compute_edit.c - wavefront/wavefront_compute_linear.c - wavefront/wavefront_debug.c - wavefront/wavefront_debug.h - wavefront/wavefront_display.c - wavefront/wavefront_extend.c - wavefront/wavefront_extend.h - + wavefront/wavefront_extend_kernels.c - + wavefront/wavefront_extend_kernels.h - + wavefront/wavefront_extend_kernels_avx.c - + wavefront/wavefront_extend_kernels_avx.h - wavefront/wavefront_heuristic.c - wavefront/wavefront_heuristic.h - wavefront/wavefront_offset.h - wavefront/wavefront_pcigar.c - wavefront/wavefront_pcigar.h - wavefront/wavefront_penalties.c - wavefront/wavefront_penalties.h - wavefront/wavefront_plot.c - wavefront/wavefront_plot.h - + wavefront/wavefront_sequences.c - + wavefront/wavefront_sequences.h - + wavefront/wavefront_termination.c - + wavefront/wavefront_termination.h - wavefront/wavefront_unialign.c - wavefront/wavefront_unialign.h - wavefront/wfa.h The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/libwfa2/-/compare/d1ac18b24d4dc7f2c86f9ccae7cdecd63f1b8d15...4c9018d9d84c24cefa25e0cc3ca942a457c2ffec -- View it on GitLab: https://salsa.debian.org/med-team/libwfa2/-/compare/d1ac18b24d4dc7f2c86f9ccae7cdecd63f1b8d15...4c9018d9d84c24cefa25e0cc3ca942a457c2ffec You're receiving this email because of your account on salsa.debian.org. Manage all notifications: https://salsa.debian.org/-/profile/notifications | Help: https://salsa.debian.org/help
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