Michael R. Crusoe pushed to branch debian-v7 at Debian Med / snakemake
Commits: 5048cdda by Alexandre Detiste at 2026-04-25T12:00:35+02:00 Import Debian changes 7.32.4-8 snakemake (7.32.4-8) unstable; urgency=medium . * Team upload. * Replace dependency on transitional python3-tz with new python3-pytz * Remove Py2 vs 3 crumb from d/rules - - - - - fdc60c10 by Bastian Germann at 2026-04-25T12:00:52+02:00 Import Debian changes 7.32.4-8.1 snakemake (7.32.4-8.1) unstable; urgency=medium . * Non-maintainer upload. * Drop unused ratelimiter dependency. (Closes: #1124258) - - - - - 3 changed files: - debian/changelog - debian/control - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,18 @@ +snakemake (7.32.4-8.1) unstable; urgency=medium + + * Non-maintainer upload. + * Drop unused ratelimiter dependency. (Closes: #1124258) + + -- Bastian Germann <[email protected]> Mon, 29 Dec 2025 16:03:31 +0100 + +snakemake (7.32.4-8) unstable; urgency=medium + + * Team upload. + * Replace dependency on transitional python3-tz with new python3-pytz + * Remove Py2 vs 3 crumb from d/rules + + -- Alexandre Detiste <[email protected]> Wed, 03 Dec 2025 16:47:10 +0100 + snakemake (7.32.4-7) unstable; urgency=medium * Tests: treat more tests as flaky (try 3 times) ===================================== debian/control ===================================== @@ -33,7 +33,6 @@ Build-Depends: ca-certificates, python3-pygments <!nocheck>, python3-pytest <!nocheck>, python3-pytools <!nocheck>, - python3-ratelimiter, python3-recommonmark <!nodoc>, python3-requests, python3-requests-mock <!nocheck>, @@ -55,11 +54,10 @@ Build-Depends: ca-certificates, python3-yte <!nocheck>, r-cran-rmarkdown, stress <!nocheck> -Standards-Version: 4.7.0 +Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/snakemake Vcs-Git: https://salsa.debian.org/med-team/snakemake.git Homepage: https://snakemake.readthedocs.io/ -Rules-Requires-Root: no Package: snakemake Architecture: all @@ -76,7 +74,6 @@ Depends: ${misc:Depends}, python3-packaging, python3-psutil, python3-pulp (>= 2.0~), - python3-ratelimiter, python3-requests, python3-toposort, python3-wrapt, ===================================== debian/rules ===================================== @@ -4,10 +4,10 @@ # export DH_VERBOSE = 1 export PYBUILD_NAME=snakemake -export PYBUILD_DESTDIR_python3=debian/snakemake +export PYBUILD_DESTDIR=debian/snakemake # copy the tests and run them from there to avoid having to clean up after them -export PYBUILD_BEFORE_TEST_python3=chmod +x {dir}/bin/snakemake; cp -r {dir}/bin {dir}/tests {build_dir} -export PYBUILD_AFTER_TEST_python3=rm -fr {build_dir}/bin {build_dir}/tests +export PYBUILD_BEFORE_TEST=chmod +x {dir}/bin/snakemake; cp -r {dir}/bin {dir}/tests {build_dir} +export PYBUILD_AFTER_TEST=rm -fr {build_dir}/bin {build_dir}/tests export PYBUILD_TEST_ARGS=python{version} -m pytest -o faulthandler_timeout=60 -v {build_dir}/tests/test*.py -k 'not test_cwl and not test_cwl_singularity and not test_url_include and not test_wrapper and not test_issue1083 and not test_github_issue78 and not test_container and not test_singularity and not test_singularity_conda and not test_convert_to_cwl and not test_report and not test_report_zip and not test_archive and not test_jupyter_notebook and not test_conda and not test_upstream_conda and not test_conda_custom_prefix and not test_script and not test_issue635 and not test_issue1093 and not test_default_resources and not test_default_remote and not test_remote and not test_output_file_cache_remote and not test_tibanna and not test_module_complex and not test_module_complex2 and not test_module_with_script and not test_module_report and not test_modules_meta_wrapper and not test_tes and not test_deploy_script and not test_deploy_hashing and not test_peppy and not test_modules_peppy and not test_report_display_code and not test_wrapper_local_git_prefix and not test_github_issue1396 and not test_az_batch_executor and not test_modules_prefix and not test_ancient and not test_github_issue1062 and not test_symlink_time_handling and not test_env_modules and not test_github_issue1460 and not test_rule_inheritance_globals and not test_prebuilt_conda_script and not test_persistent_dict and not test_issue328 and not test_pipes_fail and not test_pipes and not test_multicomp_group_jobs and not test_group_job_resources_with_pipe' # Skipped because they download executables (which is forbidden in Debian buildd and debci) @@ -54,7 +54,7 @@ execute_after_dh_auto_build: execute_after_dh_installdocs: find debian -name '__pycache__' -o name '.gitignore' | xargs rm -rf -# the modules.sh is a workaround for #928826; putting it in PYBUILD_BEFORE_TEST_python3 doesn't work +# the modules.sh is a workaround for #928826; putting it in PYBUILD_BEFORE_TEST doesn't work override_dh_auto_test: ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) . /etc/profile.d/modules.sh && PYBUILD_SYSTEM=custom dh_auto_test View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/10f9649445ba64446977c5782641923ecbf33898...fdc60c10ad4b8fb3e3f5682f86622966f2c05aa2 -- View it on GitLab: https://salsa.debian.org/med-team/snakemake/-/compare/10f9649445ba64446977c5782641923ecbf33898...fdc60c10ad4b8fb3e3f5682f86622966f2c05aa2 You're receiving this email because of your account on salsa.debian.org. 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