Étienne Mollier pushed to branch master at Debian Med / libbpp-phyl
Commits: 4d1afb51 by Étienne Mollier at 2025-09-26T21:29:48+02:00 cmake-4.patch: new: bump cmake minimum to 3.10. Closes: #1113116 - - - - - c18e27f1 by Étienne Mollier at 2025-09-26T21:30:52+02:00 d/control: declare compliance to standards version 4.7.2. - - - - - 8de0542f by Étienne Mollier at 2025-09-26T21:31:39+02:00 d/control: remove redundant Rules-Requires-Root: no. - - - - - 1b8d8588 by Étienne Mollier at 2025-09-26T21:34:27+02:00 d/watch: convert to v5 Github template. - - - - - 855bcc01 by Étienne Mollier at 2025-09-26T21:35:13+02:00 d/copyright: remove the old FSF address. - - - - - 5097eca1 by Étienne Mollier at 2025-09-26T21:35:59+02:00 d/*lintian-overrides: remove now unused t64 override. - - - - - 843b8c79 by Étienne Mollier at 2025-09-26T21:42:06+02:00 d/s/lintian-overrides: glob d/control line number. This fixes mismatches caused by variability in the d/control file. - - - - - 396f31cd by Étienne Mollier at 2025-09-26T21:43:41+02:00 d/*lintian-overrides: override conflicts-with-version. This overrides is necessary in the context of the t64 transition. - - - - - b52d1f3f by Étienne Mollier at 2025-09-26T21:44:32+02:00 d/changelog: ready for upload to unstable. - - - - - 8 changed files: - debian/changelog - debian/control - debian/copyright - debian/libbpp-phyl12t64.lintian-overrides - + debian/patches/cmake-4.patch - debian/patches/series - debian/source/lintian-overrides - debian/watch Changes: ===================================== debian/changelog ===================================== @@ -1,3 +1,19 @@ +libbpp-phyl (2.4.1-12) unstable; urgency=medium + + * Team upload. + * cmake-4.patch: new: bump cmake minimum to 3.10. (Closes: #1113116) + * d/control: declare compliance to standards version 4.7.2. + * d/control: remove redundant Rules-Requires-Root: no. + * d/watch: convert to v5 Github template. + * d/copyright: remove the old FSF address. + * d/*lintian-overrides: remove now unused t64 override. + * d/s/lintian-overrides: glob d/control line number. + This fixes mismatches caused by variability in the d/control file. + * d/*lintian-overrides: override conflicts-with-version. + This overrides is necessary in the context of the t64 transition. + + -- Étienne Mollier <[email protected]> Fri, 26 Sep 2025 21:44:17 +0200 + libbpp-phyl (2.4.1-11) unstable; urgency=medium * Since every GCC version bump ends up in a bug caused by the need to ===================================== debian/control ===================================== @@ -8,11 +8,10 @@ Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), libbpp-seq-dev -Standards-Version: 4.7.0 +Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-phyl Vcs-Git: https://salsa.debian.org/med-team/libbpp-phyl.git Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page -Rules-Requires-Root: no Package: libbpp-phyl-dev Architecture: any ===================================== debian/copyright ===================================== @@ -25,9 +25,6 @@ License: GPL-2+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . - You should have received a copy of the GNU General Public License - along with this package; if not, write to the Free Software - Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA . On Debian systems, the complete text of the GNU General Public License can be found in `/usr/share/common-licenses/GPL-2'. ===================================== debian/libbpp-phyl12t64.lintian-overrides ===================================== @@ -1,2 +1,2 @@ -libbpp-phyl12t64: package-name-doesnt-match-sonames libbpp-phyl12 +libbpp-phyl12t64: conflicts-with-version libbpp-phyl12 (<< *) libbpp-phyl12t64: no-symbols-control-file ===================================== debian/patches/cmake-4.patch ===================================== @@ -0,0 +1,19 @@ +Description: bump cmake compatibility version to 3.10. + This fixes failure to build with cmake 4. +Author: Étienne Mollier <[email protected]> +Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1113116 +Forwarded: no +Last-Update: 2025-09-26 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +--- libbpp-phyl.orig/CMakeLists.txt ++++ libbpp-phyl/CMakeLists.txt +@@ -5,7 +5,7 @@ + # Francois Gindraud (2017) + # Created: 20/08/2009 + +-cmake_minimum_required (VERSION 2.8.11) ++cmake_minimum_required (VERSION 3.10) + project (bpp-phyl CXX) + + # Compile options ===================================== debian/patches/series ===================================== @@ -1,3 +1,4 @@ spelling unforce-cxxflags.patch remove_test_likelihood_nh.patch +cmake-4.patch ===================================== debian/source/lintian-overrides ===================================== @@ -1,2 +1,2 @@ # false-positive from the t64 transition -libbpp-phyl source: version-substvar-for-external-package Conflicts ${source:Version} libbpp-phyl12t64 -> libbpp-phyl12 [debian/control:38] +libbpp-phyl source: version-substvar-for-external-package Conflicts ${source:Version} libbpp-phyl12t64 -> libbpp-phyl12 [debian/control:*] ===================================== debian/watch ===================================== @@ -1,4 +1,5 @@ -version=4 +Version: 5 -opts="filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%@PACKAGE@-$1.tar.gz%" \ - https://github.com/BioPP/bpp-phyl/tags .*/v(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz) +Template: Github +Owner: BioPP +Project: bpp-phyl View it on GitLab: https://salsa.debian.org/med-team/libbpp-phyl/-/compare/9c0510d5c1d66433ef76490c29dbeccaa9939ef9...b52d1f3fa70ad6dd328770611cd043cce2eb5de1 -- View it on GitLab: https://salsa.debian.org/med-team/libbpp-phyl/-/compare/9c0510d5c1d66433ef76490c29dbeccaa9939ef9...b52d1f3fa70ad6dd328770611cd043cce2eb5de1 You're receiving this email because of your account on salsa.debian.org.
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