Sergio Durigan Junior pushed to branch master at Debian Med / bifrost
Commits: 188bfd15 by Sergio Durigan Junior at 2025-09-27T14:25:37-04:00 d/p/0002-Fix-compilation-error-with-custom-unitig-data.patch: Fix FTBFS with GCC 15. Closes: #1096367 - - - - - 3f3e58a1 by Sergio Durigan Junior at 2025-09-27T14:31:36-04:00 d/bifrost.examples: Remove bugs file. - - - - - d0f5654b by Sergio Durigan Junior at 2025-09-27T14:33:42-04:00 Update changelog for 1.3.1-2 release - - - - - 4 changed files: - − debian/bifrost.examples - debian/changelog - + debian/patches/0002-Fix-compilation-error-with-custom-unitig-data.patch - debian/patches/series Changes: ===================================== debian/bifrost.examples deleted ===================================== @@ -1 +0,0 @@ -debian/tests/data/*.gz ===================================== debian/changelog ===================================== @@ -1,3 +1,12 @@ +bifrost (1.3.1-2) unstable; urgency=medium + + * Team upload. + * d/p/0002-Fix-compilation-error-with-custom-unitig-data.patch: + Fix FTBFS with GCC 15. (Closes: #1096367) + * d/bifrost.examples: Remove bugs file. + + -- Sergio Durigan Junior <[email protected]> Sat, 27 Sep 2025 14:33:42 -0400 + bifrost (1.3.1-1) unstable; urgency=medium * Source-only upload. ===================================== debian/patches/0002-Fix-compilation-error-with-custom-unitig-data.patch ===================================== @@ -0,0 +1,37 @@ +From: Lucas van Dijk <[email protected]> +Date: Wed, 13 May 2020 16:35:47 -0400 +Subject: Fix compilation error with custom unitig data + +Forwarded: yes, https://github.com/pmelsted/bifrost/pull/18 +Bug-Debian: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1096367 +--- + src/DataStorage.hpp | 2 ++ + src/DataStorage.tcc | 2 +- + 2 files changed, 3 insertions(+), 1 deletion(-) + +diff --git a/src/DataStorage.hpp b/src/DataStorage.hpp +index 568808d..e96a586 100755 +--- a/src/DataStorage.hpp ++++ b/src/DataStorage.hpp +@@ -65,6 +65,8 @@ class DataStorage { + + inline size_t getNbColors() const { return color_names.size(); } + ++ inline vector<string> const& getColorNames() const { return color_names; } ++ + size_t getUnitigColorsSize(const size_t nb_threads = 1) const; + + uint64_t getHash(const UnitigColorMap<U>& um) const; +diff --git a/src/DataStorage.tcc b/src/DataStorage.tcc +index 22967c9..1a485dc 100755 +--- a/src/DataStorage.tcc ++++ b/src/DataStorage.tcc +@@ -78,7 +78,7 @@ DataStorage<U>::DataStorage(const DataStorage& o) : color_sets(nullptr), shared_ + + unitig_cs_link = new atomic<uint64_t>[sz_link]; + +- for (size_t i = 0; i != sz_link; ++i) unitig_cs_link[i] = o.sz_link[i].load(); ++ for (size_t i = 0; i != sz_link; ++i) unitig_cs_link[i] = o.unitig_cs_link[i].load(); + } + + if ((o.data != nullptr) && (o.sz_cs != 0)){ ===================================== debian/patches/series ===================================== @@ -1 +1,2 @@ add_soname.patch +0002-Fix-compilation-error-with-custom-unitig-data.patch View it on GitLab: https://salsa.debian.org/med-team/bifrost/-/compare/b16203ac35d4d24b3ed5a8ded57de879f745e911...d0f5654bc7f08e723c20cbc3cdf1f2486d915e7f -- View it on GitLab: https://salsa.debian.org/med-team/bifrost/-/compare/b16203ac35d4d24b3ed5a8ded57de879f745e911...d0f5654bc7f08e723c20cbc3cdf1f2486d915e7f You're receiving this email because of your account on salsa.debian.org.
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