The following commit has been merged in the master branch:
commit d6b7dd794a5613ebf77a5a531c71dc90bf7f32a7
Author: Carlos Borroto <[email protected]>
Date: Thu Jun 21 14:30:15 2012 -0400
patch bashism_in_shell_script refreshed
diff --git a/debian/patches/bashism_in_shell_script.patch
b/debian/patches/bashism_in_shell_script.patch
index 2e79ad6..9df6b3c 100644
--- a/debian/patches/bashism_in_shell_script.patch
+++ b/debian/patches/bashism_in_shell_script.patch
@@ -2,10 +2,12 @@ Author: Andreas Tille <[email protected]>
Bug-Closed: http://bugs.debian.org/671813
Descriptions: Remove bashism from shell script
---- tophat.orig/src/tophat2.in
-+++ tophat/src/tophat2.in
+Index: tophat/src/tophat2.in
+===================================================================
+--- tophat.orig/src/tophat2.in 2012-06-21 14:28:32.730584269 -0400
++++ tophat/src/tophat2.in 2012-06-21 14:28:47.166584998 -0400
@@ -1,9 +1,9 @@
- #!/bin/sh
+ #!/bin/bash
prefix="__PREFIX__"
pbin=""
-if [[ -z $prefix ]]; then
--
A spliced read mapper for RNA-Seq
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