Author: plessy Date: 2011-12-09 05:41:40 +0000 (Fri, 09 Dec 2011) New Revision: 8859
Added: trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/ trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/ trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/changelog trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/control Removed: trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/ trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/changelog trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/control Log: [svn-buildpackage] Tagging velvet 1.1.07~nozlibcopy-1 Deleted: trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/changelog =================================================================== --- trunk/packages/velvet/trunk/debian/changelog 2011-12-08 22:18:10 UTC (rev 8856) +++ trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/changelog 2011-12-09 05:41:40 UTC (rev 8859) @@ -1,263 +0,0 @@ -velvet (1.1.06~nozlibcopy-1) unstable; urgency=low - - [ Andreas Tille ] - * New upstream version - * debian/copyright: Revised - * debian/get-orig-source: Do not remove MetaVelvet - * debian/control: - Build-Depends: texlive-latex-base - - [ Charles Plessy ] - * Corrected VCS URLs in debian/control. - * Compress source and binary packages with xz - (debian/rules, debian/get-orig-source). - * Turn on multithreading with OpenMP (debian/rules). - * Remove empty directory contrib/MetaVelvet-v0.3.1/obj (debian/rules). - - -- Charles Plessy <[email protected]> Tue, 27 Sep 2011 15:12:41 +0900 - -velvet (1.1.05-1ubuntu4) lucid; urgency=low - - * Moved from CDBS to DH - * New upstream. Still includes a copy of Zlib but the default - is now to use the system version, so removed relevant patch. - * Modified build to work on unmodified upstream (still works on - pruned upstream). - - -- Tim Booth <[email protected]> Thu, 11 Aug 2011 13:34:46 +0100 - -velvet (1.1.02~nozlibcopy-1) unstable; urgency=low - - * New upstream version - upgraded patches, tweak $(LIBS) into Z_LIB_FILES variable - of Makefile which makes patch more robust against upstream - changes - * Debhelper 8 (control+compat) - * debian/rules: Leave out Z_LIB_FILES in parameter list - * debian/get-orig-source: Once we are rebuilding the original - tarball anyway it makes sense to remove an outdated copy of - MetaVelvet and replace it rather by a hint to the currently - maintained source in README.source - * Standards-Version: 3.9.2 (no changes needed) - - -- Andreas Tille <[email protected]> Fri, 15 Apr 2011 10:51:16 +0200 - -velvet (1.0.18~nozlibcopy-1) unstable; urgency=low - - * New upstream version - * debian/get-orig-source: Make sure MD5sum stays the same for different - download - - -- Andreas Tille <[email protected]> Wed, 19 Jan 2011 08:48:19 +0100 - -velvet (1.0.15~nozlibcopy-2) unstable; urgency=low - - * Fix FTBFS with ld --as-needed (thanks for the patch to - Matthias Klose) - Closes: #607535 - - -- Andreas Tille <[email protected]> Mon, 20 Dec 2010 08:43:16 +0100 - -velvet (1.0.15~nozlibcopy-1) unstable; urgency=low - - * New upstream source - * Standards-Version: 3.9.1 (no changes needed) - * debian/get-upstream-source: Remove precompiled *.o files and - .DS_Store files once we are repackaging anyway - * debian/patches/fix-perl-path.patch: Fix Perl path - - -- Andreas Tille <[email protected]> Wed, 24 Nov 2010 15:42:33 +0100 - -velvet (1.0.02~nozlibcopy-1) unstable; urgency=low - - * New upstream version - * Source format 3.0 (quilt) - * debian/control: - - Recommends: python (some new scripts in /usr/share/velvet/contrib - are Python scripts) - - Build-Depends: quilt - * debian/rules: - include /usr/share/cdbs/1/rules/patchsys-quilt.mk - (instead of simple-patchsys) - * debian/patches: Switch to quilt - * debian/patches/shuffleSequences_fasta.patch: - Add interpreter to Python script - - -- Andreas Tille <[email protected]> Thu, 24 Jun 2010 15:41:53 +0200 - -velvet (0.7.61~nozlibcopy-1) unstable; urgency=low - - * New upstream version - * debian/get-orig-source, debian/rules: Strip zlib copy from - upstream tarball - - -- Andreas Tille <[email protected]> Mon, 22 Mar 2010 15:41:53 +0100 - -velvet (0.7.59~nozlibcopy-1) unstable; urgency=low - - * New upstream release - - [ Charles Plessy ] - * Incremented Standard-Version in debian/control to reflect conformance - with Policy 3.8.4 (no changes needed). - - [ Andreas Tille ] - * Fixed watch file to make sure it is not supporting newer upstream - - -- Charles Plessy <[email protected]> Sat, 20 Feb 2010 13:00:13 +0900 - -velvet (0.7.56~nozlibcopy-1) unstable; urgency=low - - * New upstream version. - * Repackaged the upstream directory to remove the convenience copy - of the zlib. Documented this in ‘debian/README.source’. - Closes: #561433. - * Updated debian/copyright. - * Added ‘include_debians_zlib.patch’ to enforce the use of - /usr/include/zlib.h. This patch is applied using CDBS, see - ‘debian/rules’ and ‘debian/README.source’. - * Renamed ‘debian/reference’ ‘debian/upstream-metadata.yaml’ and - centralised upstream-specific information there. - - -- Charles Plessy <[email protected]> Mon, 25 Jan 2010 13:03:06 +0900 - -velvet (0.7.55-1) unstable; urgency=low - - * New upstream version - - -- Andreas Tille <[email protected]> Fri, 25 Sep 2009 14:52:41 +0200 - -velvet (0.7.53-1) unstable; urgency=low - - * New upstream release: - - Ignored reads in Pebble corrected - - Added automatic measure of median coverage and median insert length - - Updated manual to cover the above - - -- Charles Plessy <[email protected]> Fri, 04 Sep 2009 13:42:22 +0900 - -velvet (0.7.52-1) unstable; urgency=low - - * New upstream release: - V 0.7.51 - - Small parsing bug - - Correction to the observed-insert-length script - - Verified strncpy calls - - NCBI friendly 10bp N-gaps - V 0.7.52 - - Crashing bug when parsing fa.gz files - - Crashing bug with tiny Graph files - - Bug when loading FASTA files with short lines - - Corrected snp_view.pl script to write reverse strand reads in - snp_view_reads file - - Corrected snp_view.pl script to behave better near the edges of contigs - - Updated observed_insert_length to compute the standard deviation of - the set - - Corrected observed_insert_length script so that it does not crash on - empty libraries - - Crashing bug when providing an odd number of paired reads - - Mapping bug of reads during tour bus correction - * Replaced the UNRELEASED tag by ‘unstable’ in debian/changelog as - 0.7.50-1 was really uploaded and accepted by the archive. - - -- Charles Plessy <[email protected]> Thu, 03 Sep 2009 20:00:54 +0900 - -velvet (0.7.50-1) unstable; urgency=low - - * New upstream release: - V 0.7.49 - - Added the optional output of unused reads - - Added David Studholme's FastA -> AGP script - V 0.7.50 - - Added the extractContigReads script - - Updated the FastA -> AGP script - - Added the observed-insert-length script - - Small parsing bug in simplified read import - * Incremented Standards-Version in debian/control to reflect conformance - with Policy 3.8.3 (no changes needed). - - -- Charles Plessy <[email protected]> Wed, 19 Aug 2009 21:58:49 +0900 - -velvet (0.7.48-1) unstable; urgency=low - - * New upstream release: - - Accelerated concatenation (pre-graph and graph) - - Unlimited contig size - - Bug in parsing FASTA files with very long lines - - Parsing bug in snp_view.pl script - - -- Charles Plessy <[email protected]> Tue, 11 Aug 2009 19:54:03 +0900 - -velvet (0.7.47-1) unstable; urgency=low - - * New upstream release correcting bugs and enhancing documentation. - * Multi-Arch support (‘foreign’) in debian/control. - * Corrected debian/install to avoid ugly ‘contrib/contrib’ location. - - -- Charles Plessy <[email protected]> Thu, 30 Jul 2009 13:43:13 +0900 - -velvet (0.7.44-1) unstable; urgency=low - - * New upstream release. - * Added bibliographic information in BibTeX format in debian/references. - * debian/rules: touch zlib to avoid third-party zlib to be built. - * Removed ‘debian/patches/20_external_zlib.patch’. Passing apropriate - variables in debian/rules is enough to build dynamically on Debian's - zlib. - * Removed the quilt patch system (debian/control, debian/README.source - debian/rules). - * Incremented Standards-Version in debian/control to reflect conformance - with Policy 3.8.2 (no changes needed). - * Corrected the installation of files that were moved from the - ‘third-party’ directory to the ‘contrib’ directory. - * Experimentation on debian/copyright. - - -- Charles Plessy <[email protected]> Sun, 12 Jul 2009 00:24:56 +0900 - -velvet (0.7.37-1) unstable; urgency=low - - * New upstream release. - - Small formatting change to error messages - - K > 31 now possible - - --help option corrected for velvetg - - Acceleration of k-mer operations (comparable to 64bit int performance) - - Fixed variable lengths - - Reordered struct declaration for more efficent memory alignment - * debian/rules: - - Restored manpage generation for velvetg*. - - Added forgotten CFLAGS for the colorspace building. - - -- Charles Plessy <[email protected]> Sat, 27 Jun 2009 12:27:27 +0900 - -velvet (0.7.34-1) unstable; urgency=low - - * New upstream release correcting multiple bugs, changing the stats output, - allowing optional scaffolding and multiple rounds of Pebble. - * Added the programs velveth_de and velvetg_de to the package in /usr/bin, - and the scripts shuffleSequences_fasta.pl and shuffleSequences_fastq.pl in - /usr/share/velvet (debian/rules, debian/install). - * Refreshed debian/copyright. - * Temporarly disabled the manpage generation of velvetg* because the --help - option is not available (debian/rules). - - -- Charles Plessy <[email protected]> Tue, 09 Jun 2009 21:28:03 +0900 - -velvet (0.7.31-1) unstable; urgency=low - - * New upstream version - * Standards-Version: 3.8.1 (no changes needed) - * Create manpages using help2man - * Move third-party/layout and third-party/afg_handling to examples - because these scripts are actually not to run velvet but for - the convenience of users - in /urs/share/velvet these scripts - seem to be perfectly hidden and in /usr/share/doc/velvet might - create users attendance - * Added missing quilt entry in debian/rules - - -- Andreas Tille <[email protected]> Fri, 27 Mar 2009 13:23:32 +0100 - -velvet (0.7.24-1) unstable; urgency=low - - * Initial release (Closes: #487026) - - -- Charles Plessy <[email protected]> Wed, 09 Jul 2008 14:06:55 +0900 Copied: trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/changelog (from rev 8858, trunk/packages/velvet/trunk/debian/changelog) =================================================================== --- trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/changelog (rev 0) +++ trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/changelog 2011-12-09 05:41:40 UTC (rev 8859) @@ -0,0 +1,272 @@ +velvet (1.1.07~nozlibcopy-1) unstable; urgency=low + + * New upstream release (Closes: #647415). + * debian/contol: + - Pre-Depends on dpkg (>= 1.15.6) for Ubuntu LTS. + - Removed Multi-Arch: foreign. + + -- Charles Plessy <[email protected]> Fri, 09 Dec 2011 14:07:58 +0900 + +velvet (1.1.06~nozlibcopy-1) unstable; urgency=low + + [ Andreas Tille ] + * New upstream version + * debian/copyright: Revised + * debian/get-orig-source: Do not remove MetaVelvet + * debian/control: + Build-Depends: texlive-latex-base + + [ Charles Plessy ] + * Corrected VCS URLs in debian/control. + * Compress source and binary packages with xz + (debian/rules, debian/get-orig-source). + * Turn on multithreading with OpenMP (debian/rules). + * Remove empty directory contrib/MetaVelvet-v0.3.1/obj (debian/rules). + + -- Charles Plessy <[email protected]> Tue, 27 Sep 2011 15:12:41 +0900 + +velvet (1.1.05-1ubuntu4) lucid; urgency=low + + * Moved from CDBS to DH + * New upstream. Still includes a copy of Zlib but the default + is now to use the system version, so removed relevant patch. + * Modified build to work on unmodified upstream (still works on + pruned upstream). + + -- Tim Booth <[email protected]> Thu, 11 Aug 2011 13:34:46 +0100 + +velvet (1.1.02~nozlibcopy-1) unstable; urgency=low + + * New upstream version + upgraded patches, tweak $(LIBS) into Z_LIB_FILES variable + of Makefile which makes patch more robust against upstream + changes + * Debhelper 8 (control+compat) + * debian/rules: Leave out Z_LIB_FILES in parameter list + * debian/get-orig-source: Once we are rebuilding the original + tarball anyway it makes sense to remove an outdated copy of + MetaVelvet and replace it rather by a hint to the currently + maintained source in README.source + * Standards-Version: 3.9.2 (no changes needed) + + -- Andreas Tille <[email protected]> Fri, 15 Apr 2011 10:51:16 +0200 + +velvet (1.0.18~nozlibcopy-1) unstable; urgency=low + + * New upstream version + * debian/get-orig-source: Make sure MD5sum stays the same for different + download + + -- Andreas Tille <[email protected]> Wed, 19 Jan 2011 08:48:19 +0100 + +velvet (1.0.15~nozlibcopy-2) unstable; urgency=low + + * Fix FTBFS with ld --as-needed (thanks for the patch to + Matthias Klose) + Closes: #607535 + + -- Andreas Tille <[email protected]> Mon, 20 Dec 2010 08:43:16 +0100 + +velvet (1.0.15~nozlibcopy-1) unstable; urgency=low + + * New upstream source + * Standards-Version: 3.9.1 (no changes needed) + * debian/get-upstream-source: Remove precompiled *.o files and + .DS_Store files once we are repackaging anyway + * debian/patches/fix-perl-path.patch: Fix Perl path + + -- Andreas Tille <[email protected]> Wed, 24 Nov 2010 15:42:33 +0100 + +velvet (1.0.02~nozlibcopy-1) unstable; urgency=low + + * New upstream version + * Source format 3.0 (quilt) + * debian/control: + - Recommends: python (some new scripts in /usr/share/velvet/contrib + are Python scripts) + - Build-Depends: quilt + * debian/rules: + include /usr/share/cdbs/1/rules/patchsys-quilt.mk + (instead of simple-patchsys) + * debian/patches: Switch to quilt + * debian/patches/shuffleSequences_fasta.patch: + Add interpreter to Python script + + -- Andreas Tille <[email protected]> Thu, 24 Jun 2010 15:41:53 +0200 + +velvet (0.7.61~nozlibcopy-1) unstable; urgency=low + + * New upstream version + * debian/get-orig-source, debian/rules: Strip zlib copy from + upstream tarball + + -- Andreas Tille <[email protected]> Mon, 22 Mar 2010 15:41:53 +0100 + +velvet (0.7.59~nozlibcopy-1) unstable; urgency=low + + * New upstream release + + [ Charles Plessy ] + * Incremented Standard-Version in debian/control to reflect conformance + with Policy 3.8.4 (no changes needed). + + [ Andreas Tille ] + * Fixed watch file to make sure it is not supporting newer upstream + + -- Charles Plessy <[email protected]> Sat, 20 Feb 2010 13:00:13 +0900 + +velvet (0.7.56~nozlibcopy-1) unstable; urgency=low + + * New upstream version. + * Repackaged the upstream directory to remove the convenience copy + of the zlib. Documented this in ‘debian/README.source’. + Closes: #561433. + * Updated debian/copyright. + * Added ‘include_debians_zlib.patch’ to enforce the use of + /usr/include/zlib.h. This patch is applied using CDBS, see + ‘debian/rules’ and ‘debian/README.source’. + * Renamed ‘debian/reference’ ‘debian/upstream-metadata.yaml’ and + centralised upstream-specific information there. + + -- Charles Plessy <[email protected]> Mon, 25 Jan 2010 13:03:06 +0900 + +velvet (0.7.55-1) unstable; urgency=low + + * New upstream version + + -- Andreas Tille <[email protected]> Fri, 25 Sep 2009 14:52:41 +0200 + +velvet (0.7.53-1) unstable; urgency=low + + * New upstream release: + - Ignored reads in Pebble corrected + - Added automatic measure of median coverage and median insert length + - Updated manual to cover the above + + -- Charles Plessy <[email protected]> Fri, 04 Sep 2009 13:42:22 +0900 + +velvet (0.7.52-1) unstable; urgency=low + + * New upstream release: + V 0.7.51 + - Small parsing bug + - Correction to the observed-insert-length script + - Verified strncpy calls + - NCBI friendly 10bp N-gaps + V 0.7.52 + - Crashing bug when parsing fa.gz files + - Crashing bug with tiny Graph files + - Bug when loading FASTA files with short lines + - Corrected snp_view.pl script to write reverse strand reads in + snp_view_reads file + - Corrected snp_view.pl script to behave better near the edges of contigs + - Updated observed_insert_length to compute the standard deviation of + the set + - Corrected observed_insert_length script so that it does not crash on + empty libraries + - Crashing bug when providing an odd number of paired reads + - Mapping bug of reads during tour bus correction + * Replaced the UNRELEASED tag by ‘unstable’ in debian/changelog as + 0.7.50-1 was really uploaded and accepted by the archive. + + -- Charles Plessy <[email protected]> Thu, 03 Sep 2009 20:00:54 +0900 + +velvet (0.7.50-1) unstable; urgency=low + + * New upstream release: + V 0.7.49 + - Added the optional output of unused reads + - Added David Studholme's FastA -> AGP script + V 0.7.50 + - Added the extractContigReads script + - Updated the FastA -> AGP script + - Added the observed-insert-length script + - Small parsing bug in simplified read import + * Incremented Standards-Version in debian/control to reflect conformance + with Policy 3.8.3 (no changes needed). + + -- Charles Plessy <[email protected]> Wed, 19 Aug 2009 21:58:49 +0900 + +velvet (0.7.48-1) unstable; urgency=low + + * New upstream release: + - Accelerated concatenation (pre-graph and graph) + - Unlimited contig size + - Bug in parsing FASTA files with very long lines + - Parsing bug in snp_view.pl script + + -- Charles Plessy <[email protected]> Tue, 11 Aug 2009 19:54:03 +0900 + +velvet (0.7.47-1) unstable; urgency=low + + * New upstream release correcting bugs and enhancing documentation. + * Multi-Arch support (‘foreign’) in debian/control. + * Corrected debian/install to avoid ugly ‘contrib/contrib’ location. + + -- Charles Plessy <[email protected]> Thu, 30 Jul 2009 13:43:13 +0900 + +velvet (0.7.44-1) unstable; urgency=low + + * New upstream release. + * Added bibliographic information in BibTeX format in debian/references. + * debian/rules: touch zlib to avoid third-party zlib to be built. + * Removed ‘debian/patches/20_external_zlib.patch’. Passing apropriate + variables in debian/rules is enough to build dynamically on Debian's + zlib. + * Removed the quilt patch system (debian/control, debian/README.source + debian/rules). + * Incremented Standards-Version in debian/control to reflect conformance + with Policy 3.8.2 (no changes needed). + * Corrected the installation of files that were moved from the + ‘third-party’ directory to the ‘contrib’ directory. + * Experimentation on debian/copyright. + + -- Charles Plessy <[email protected]> Sun, 12 Jul 2009 00:24:56 +0900 + +velvet (0.7.37-1) unstable; urgency=low + + * New upstream release. + - Small formatting change to error messages + - K > 31 now possible + - --help option corrected for velvetg + - Acceleration of k-mer operations (comparable to 64bit int performance) + - Fixed variable lengths + - Reordered struct declaration for more efficent memory alignment + * debian/rules: + - Restored manpage generation for velvetg*. + - Added forgotten CFLAGS for the colorspace building. + + -- Charles Plessy <[email protected]> Sat, 27 Jun 2009 12:27:27 +0900 + +velvet (0.7.34-1) unstable; urgency=low + + * New upstream release correcting multiple bugs, changing the stats output, + allowing optional scaffolding and multiple rounds of Pebble. + * Added the programs velveth_de and velvetg_de to the package in /usr/bin, + and the scripts shuffleSequences_fasta.pl and shuffleSequences_fastq.pl in + /usr/share/velvet (debian/rules, debian/install). + * Refreshed debian/copyright. + * Temporarly disabled the manpage generation of velvetg* because the --help + option is not available (debian/rules). + + -- Charles Plessy <[email protected]> Tue, 09 Jun 2009 21:28:03 +0900 + +velvet (0.7.31-1) unstable; urgency=low + + * New upstream version + * Standards-Version: 3.8.1 (no changes needed) + * Create manpages using help2man + * Move third-party/layout and third-party/afg_handling to examples + because these scripts are actually not to run velvet but for + the convenience of users - in /urs/share/velvet these scripts + seem to be perfectly hidden and in /usr/share/doc/velvet might + create users attendance + * Added missing quilt entry in debian/rules + + -- Andreas Tille <[email protected]> Fri, 27 Mar 2009 13:23:32 +0100 + +velvet (0.7.24-1) unstable; urgency=low + + * Initial release (Closes: #487026) + + -- Charles Plessy <[email protected]> Wed, 09 Jul 2008 14:06:55 +0900 Deleted: trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/control =================================================================== --- trunk/packages/velvet/trunk/debian/control 2011-12-08 22:18:10 UTC (rev 8856) +++ trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/control 2011-12-09 05:41:40 UTC (rev 8859) @@ -1,44 +0,0 @@ -Source: velvet -Section: science -Priority: optional -Maintainer: Debian Med Packaging Team <[email protected]> -DM-Upload-Allowed: yes -Uploaders: Charles Plessy <[email protected]>, - Andreas Tille <[email protected]> -Build-Depends: debhelper (>= 8), zlib1g-dev, help2man, quilt, texlive-latex-base -Standards-Version: 3.9.2 -Homepage: http://www.ebi.ac.uk/~zerbino/velvet/ -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/velvet/trunk/ -Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/velvet/trunk/ - -Package: velvet -Architecture: any -Multi-Arch: foreign -Depends: ${shlibs:Depends}, ${misc:Depends} -Recommends: python -Suggests: velvet-example -Description: Nucleic acid sequence assembler for very short reads - Velvet is a de novo genomic assembler specially designed for short read - sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and - Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near - Cambridge, in the United Kingdom. - . - Velvet currently takes in short read sequences, removes errors then produces - high quality unique contigs. It then uses paired read information, if - available, to retrieve the repeated areas between contigs. - -Package: velvet-example -Architecture: all -Depends: ${misc:Depends} -Description: Example data for the Velvet sequence assembler - Velvet is a de novo genomic assembler specially designed for short read - sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and - Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near - Cambridge, in the United Kingdom. - . - Velvet currently takes in short read sequences, removes errors then produces - high quality unique contigs. It then uses paired read information, if - available, to retrieve the repeated areas between contigs. - . - This package contains the example data distributed in the sources of Velvet, - a de novo genomic assembler. Copied: trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/control (from rev 8858, trunk/packages/velvet/trunk/debian/control) =================================================================== --- trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/control (rev 0) +++ trunk/packages/velvet/tags/1.1.07~nozlibcopy-1/debian/control 2011-12-09 05:41:40 UTC (rev 8859) @@ -0,0 +1,45 @@ +Source: velvet +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +DM-Upload-Allowed: yes +Uploaders: Charles Plessy <[email protected]>, + Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 8), zlib1g-dev, help2man, quilt, texlive-latex-base +Standards-Version: 3.9.2 +Homepage: http://www.ebi.ac.uk/~zerbino/velvet/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/velvet/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/velvet/trunk/ + +Package: velvet +Architecture: any +Pre-Depends: dpkg (>= 1.15.6) +Depends: ${shlibs:Depends}, ${misc:Depends} +Recommends: python +Suggests: velvet-example +Description: Nucleic acid sequence assembler for very short reads + Velvet is a de novo genomic assembler specially designed for short read + sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and + Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near + Cambridge, in the United Kingdom. + . + Velvet currently takes in short read sequences, removes errors then produces + high quality unique contigs. It then uses paired read information, if + available, to retrieve the repeated areas between contigs. + +Package: velvet-example +Architecture: all +Pre-Depends: dpkg (>= 1.15.6) +Depends: ${misc:Depends} +Description: Example data for the Velvet sequence assembler + Velvet is a de novo genomic assembler specially designed for short read + sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and + Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near + Cambridge, in the United Kingdom. + . + Velvet currently takes in short read sequences, removes errors then produces + high quality unique contigs. It then uses paired read information, if + available, to retrieve the repeated areas between contigs. + . + This package contains the example data distributed in the sources of Velvet, + a de novo genomic assembler. _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
