Author: moeller Date: 2011-11-03 12:38:16 +0000 (Thu, 03 Nov 2011) New Revision: 8401
Added: trunk/packages/ugene/trunk/debian/README.Debian trunk/packages/ugene/trunk/debian/ugene.lintian-overrides Modified: trunk/packages/ugene/trunk/debian/changelog trunk/packages/ugene/trunk/debian/control trunk/packages/ugene/trunk/debian/copyright trunk/packages/ugene/trunk/debian/rules Log: First upload of ugene to experimental. Added: trunk/packages/ugene/trunk/debian/README.Debian =================================================================== --- trunk/packages/ugene/trunk/debian/README.Debian (rev 0) +++ trunk/packages/ugene/trunk/debian/README.Debian 2011-11-03 12:38:16 UTC (rev 8401) @@ -0,0 +1,20 @@ +ugene for Debian and Ubuntu +=========================== + +UGENE is great to have around. It was first released to Ubuntu. +This package took the sources from upstream's Ubuntu PPA and +recompiled on Debian. + +The upstream developer has done all the Debian packaging himself +and has commit privileges to the Debian Med SCM. It will be +interesting to see this package, which in term of functionality +has quite a character of a Meta-Package, will develop with +helping hands of the distribution. + +The package has a series of source code redundancies with packages +that Debian is already shipping. We need to work on those a bit +for the package to leave experimental. + +Steffen - the sponsor + +-- Wed Nov 2 13:42:11 CET 2011 Modified: trunk/packages/ugene/trunk/debian/changelog =================================================================== --- trunk/packages/ugene/trunk/debian/changelog 2011-11-03 10:00:00 UTC (rev 8400) +++ trunk/packages/ugene/trunk/debian/changelog 2011-11-03 12:38:16 UTC (rev 8401) @@ -1,3 +1,13 @@ +ugene (1.9.8+repack-1) experimental; urgency=low + + * First release to Debian + - added README.Debian + - increased policy version to 3.9.2 + - added URLs for version control system + * Added debug package. + + -- Steffen Moeller <[email protected]> Wed, 02 Nov 2011 13:29:07 +0100 + ugene (1.9.8+repack-0ubuntu1~oneiric) oneiric; urgency=low * Latest release oneiric build @@ -79,8 +89,9 @@ * New upstream release * Copyright information updated - -- Konstantin Okonechnikov <k.okonechnikov@gmail> Tue, 7 Apr 2009 00:15:00 +0600 + -- Konstantin Okonechnikov <[email protected]> Tue, 7 Apr 2009 00:15:00 +0600 + ugene (1.5.2+repack-0ubuntu1) karmic; urgency=low * New upstream release Modified: trunk/packages/ugene/trunk/debian/control =================================================================== --- trunk/packages/ugene/trunk/debian/control 2011-11-03 10:00:00 UTC (rev 8400) +++ trunk/packages/ugene/trunk/debian/control 2011-11-03 12:38:16 UTC (rev 8401) @@ -1,11 +1,13 @@ Source: ugene Section: science Priority: optional -Maintainer: Ubuntu Developers <[email protected]> -XSBC-Original-Maintainer: Ivan Efremov <[email protected]> +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Ivan Efremov <[email protected]>, Steffen Moeller <[email protected]> Build-Depends: libqt4-dev (>= 4.7.0), libqtwebkit-dev, libqt4-opengl-dev (>= 4.7.0), zlib1g-dev, debhelper (>=5.0.38) -Standards-Version: 3.9.1 +Standards-Version: 3.9.2 Homepage: http://ugene.unipro.ru +Vcs-svn: svn://svn.debian.org/svn/debian-med/trunk/packages/ugene/trunk +Vcs-browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/ugene/trunk/ Package: ugene Architecture: any @@ -25,3 +27,20 @@ sequence analysis. . This package contains various data and example files for UGENE. + +Package: ugene-dbg +Architecture: any +Priority: extra +Section: debug +Depends: ${misc:Depends}, ugene (= ${binary:Version}) +Description: integrated bioinformatics toolkit + Unipro UGENE is a cross-platform visual environment for DNA and protein + sequence analysis. UGENE integrates the most important bioinformatics + computational algorithms and provides an easy-to-use GUI for performing + complex analysis of the genomic data. One of the main features of UGENE + is a designer for custom bioinformatics workflows. + . + This package provides symbols stripped from the regular binaries to + help with further information during debug sessions. You may be asked + to install this package to help localising a bug you reported to + the developers. Modified: trunk/packages/ugene/trunk/debian/copyright =================================================================== --- trunk/packages/ugene/trunk/debian/copyright 2011-11-03 10:00:00 UTC (rev 8400) +++ trunk/packages/ugene/trunk/debian/copyright 2011-11-03 12:38:16 UTC (rev 8401) @@ -48,7 +48,8 @@ if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA. - See /usr/share/common-licenses/GPL for the complete text of the GPL + On Debian systems, see /usr/share/common-licenses/GPL-2 for the complete + text of the GPL. Files: src/corelibs/U2Formats/src/ABIFormat.cpp @@ -115,7 +116,8 @@ the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA. - See /usr/share/common-licenses/GPL for the complete text of the GPL + On Debian systems, see /usr/share/common-licenses/GPL-2 for the + complete text of the GPL. Note: The Files in src/plugins_3rdparty/uhmmer/src/u_spu and @@ -181,7 +183,9 @@ src/plugins_3rdparty/hmm3/src/hmmer3/COPYRIGHT file for a full list. HMMER is distributed under the terms of the GNU General Public License - (GPLv3). + (GPLv3). On Debian systems, see /usr/share/common-licenses/GPL-3 for + the full text of the license. + The Files in src/plugins_3rdparty/hmm3/src/hmmer3/easel @@ -193,7 +197,10 @@ license. See the src/plugins_3rdparty/hmm3/src/hmmer3/easel/LICENSE file for more details. + On Debian systems, see /usr/share/common-licenses/BSD for the full + text of the license. + The Files in src/plugins/biostruct3d_view/src/gl2ps GL2PS, an OpenGL to PostScript Printing Library Copyright (C) 1999-2006 Christophe Geuzaine <[email protected]> @@ -213,6 +220,9 @@ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See either the GNU Library General Public License or the GL2PS License for more details. + + On Debian systems, see /usr/share/common-licenses/GPL-2 for the + full text of the GPL version 2. The Files in src/plugins_3rdparty/ball/include and @@ -230,7 +240,10 @@ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. + On Debian systems, see /usr/share/common-licenses/LGPL-2 for the + full text of the license. + The Files in src/plugins_3rdparty/phylyp/src version 3.6. (c) Copyright 1993-2004 by the University of Washington. Written by Joseph Felsenstein, Akiko Fuseki, Sean Lamont, and Andrew Keeffe. @@ -256,12 +269,16 @@ You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software - Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA + Foundation, Inc., 51 Franklin Street, Fifth Floor, + Boston, MA 02110-1301 USA Please send bug reports, comments etc. to: [email protected] + On Debian systems, see /usr/share/common-licenses/GPL-2 for the + full text of the license. + The Files in src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1 Copyright (C) 2007 @@ -275,7 +292,10 @@ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. + On Debian systems, see /usr/share/common-licenses/GPL-3 for the + full text of the license. + The Files in src/plugins_3rdparty/bowtie/src/bowtie/visualstudio ISO C9x compliant inttypes.h for Microsoft Visual Studio Based on ISO/IEC 9899:TC2 Committee draft (May 6, 2005) WG14/N1124 @@ -374,8 +394,8 @@ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - - -Packaging: +Files: debian/* +License: Copyright (C) 2008-2011 by Ivan Efremov <[email protected]> - released under the GPL. + released under the GPL. On Debian systems, see + /usr/share/common-licenses/GPL-3 for the full text of the license. Modified: trunk/packages/ugene/trunk/debian/rules =================================================================== --- trunk/packages/ugene/trunk/debian/rules 2011-11-03 10:00:00 UTC (rev 8400) +++ trunk/packages/ugene/trunk/debian/rules 2011-11-03 12:38:16 UTC (rev 8401) @@ -57,7 +57,8 @@ dh_testroot dh_installchangelogs debian/changelog dh_installdocs - dh_strip + dh_strip --dbg-package=ugene-dbg + dh_lintian dh_compress dh_fixperms dh_installdeb Added: trunk/packages/ugene/trunk/debian/ugene.lintian-overrides =================================================================== --- trunk/packages/ugene/trunk/debian/ugene.lintian-overrides (rev 0) +++ trunk/packages/ugene/trunk/debian/ugene.lintian-overrides 2011-11-03 12:38:16 UTC (rev 8401) @@ -0,0 +1,4 @@ +# For this first upload to experimental the build instructions were not +# touched but will be communicated further with upstream. +ugene binary: embedded-library usr/lib64/ugene/libugenedb.so.1.0.0: sqlite + _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
