Author: moeller Date: 2011-11-02 10:02:09 +0000 (Wed, 02 Nov 2011) New Revision: 8379
Added: trunk/packages/ugene/trunk/debian/ trunk/packages/ugene/trunk/debian/changelog trunk/packages/ugene/trunk/debian/compat trunk/packages/ugene/trunk/debian/control trunk/packages/ugene/trunk/debian/copyright trunk/packages/ugene/trunk/debian/rules trunk/packages/ugene/trunk/debian/source/ trunk/packages/ugene/trunk/debian/source/format trunk/packages/ugene/trunk/debian/watch Log: Added build instructions from upstream - as prepared for Ubuntu, where ugene is already shipping. Property changes on: trunk/packages/ugene/trunk/debian ___________________________________________________________________ Added: mergeWithUpstream + 1 Added: trunk/packages/ugene/trunk/debian/changelog =================================================================== --- trunk/packages/ugene/trunk/debian/changelog (rev 0) +++ trunk/packages/ugene/trunk/debian/changelog 2011-11-02 10:02:09 UTC (rev 8379) @@ -0,0 +1,140 @@ +ugene (1.9.8+repack-0ubuntu1~oneiric) oneiric; urgency=low + + * Latest release oneiric build + + -- Ivan Novikov <[email protected]> Thu, 27 Oct 2011 15:33:13 +0700 + +ugene (1.9.8+repack-0ubuntu1~natty) natty; urgency=low + + * New upstream release + + -- Ivan Novikov <[email protected]> Thu, 27 Oct 2011 12:25:50 +0700 + +ugene (1.9.5+repack-0ubuntu1~natty) natty; urgency=low + + * New upstream release + + -- Alexey Kuznecov <[email protected]> Wed, 03 Aug 2011 20:20:50 +0700 + +ugene (1.9.4+repack-0ubuntu1~maverick) maverick; urgency=low + + * Latest release maverick build + + -- Alexey Kuznecov <[email protected]> Thu, 14 Jul 2011 21:15:23 +0700 + +ugene (1.9.4+repack-0ubuntu1~natty) natty; urgency=low + + * New upstream release + * Copyright information updated + + -- Alexey Kuznecov <[email protected]> Thu, 14 Jul 2011 21:07:52 +0700 + +ugene (1.9.3+repack-0ubuntu1~maverick) maverick; urgency=low + + * Latest release maverick build + + -- Konstantin Okonechnikov <[email protected]> Wed, 15 Jun 2011 10:42:00 +0700 + +ugene (1.9.2+repack-0ubuntu1~maverick) maverick; urgency=low + + * Latest release maverick build + + -- Konstantin Okonechnikov <[email protected]> Tue, 29 Mar 2011 11:25:00 +0700 + + +ugene (1.9.1+repack-0ubuntu3) maverick; urgency=low + + * Latest release maverick build, new build attempt + + -- Konstantin Okonechnikov <[email protected]> Thu, 10 Feb 2011 10:37:17 +0700 + + +ugene (1.9.1+repack-0ubuntu2) maverick; urgency=low + + * Latest release maverick build, new build attempt + + -- Konstantin Okonechnikov <[email protected]> Wed, 09 Feb 2011 13:55:17 +0700 + + +ugene (1.9.1+repack-0ubuntu1) maverick; urgency=low + + * Latest release maverick build + + -- Konstantin Okonechnikov <[email protected]> Wed, 09 Feb 2011 12:55:17 +0700 + + +ugene (1.7.2+repack-0ubuntu1) lucid; urgency=low + + * Latest release lucid build + * Merging with changes from official Ubuntu package + + -- Konstantin Okonechnikov <[email protected]> Mon, 23 Aug 2010 16:55:17 +0700 + +ugene (1.6.2+repack-0ubuntu2) lucid; urgency=low + + * Latest release lucid build + -- Konstantin Okonechnikov <[email protected]> Wed, 12 May 2010 12:58:00 +0700 + +ugene (1.6.2+repack-0ubuntu1~ppa1~karmic1) karmic; urgency=low + + * New upstream release + * Copyright information updated + -- Konstantin Okonechnikov <k.okonechnikov@gmail> Tue, 7 Apr 2009 00:15:00 +0600 + +ugene (1.5.2+repack-0ubuntu1) karmic; urgency=low + + * New upstream release + * Copyright information updated + + -- Ivan Efremov <[email protected]> Mon, 06 Jul 2009 12:58:00 +0700 + +ugene (1.5.1+repack-0ubuntu1) karmic; urgency=low + + * New upstream release + * Copyright information updated + + -- Ivan Efremov <[email protected]> Fri, 17 Jul 2009 18:04:24 +0700 + +ugene (1.5.0+repack-0ubuntu1) karmic; urgency=low + + * New upstream release + * Copyright information updated + * Versions of needed packages are bumped up + because of some bugs in older versions + + -- Ivan Efremov <[email protected]> Tue, 07 Jul 2009 16:39:27 +0700 + +ugene (1.4.2+repack-0ubuntu1) karmic; urgency=low + + * New upstream release + + -- Morten Kjeldgaard <[email protected]> Tue, 16 Jun 2009 13:20:00 +0200 + +ugene (1.4.1+repack-0ubuntu1) karmic; urgency=low + + * New upstream release. + * Bump-up Standards. + + -- Alessio Treglia <[email protected]> Thu, 30 Apr 2009 08:14:03 +0200 + +ugene (1.3.3+repack-0ubuntu1) jaunty; urgency=low + + [ Bhavani Shankar ] + * New Upstream version (LP: #326830) + * Files unneeded for this package were removed from + the original tarball. + + [ Morten Kjeldgaard ] + * Fixed debian/watch to mangle local name + * Fixed get-orig-source rule to name repackaged tarball correctly. + * Copyright for two files specified. + + -- Bhavani Shankar <[email protected]> Sun, 08 Feb 2009 16:32:24 +0530 + +ugene (1.3.2+repack-0ubuntu1) jaunty; urgency=low + + * Initial packaging (LP: #319917) + * Files unneeded for this package were removed from + the original tarball + + -- Ivan Efremov <[email protected]> Mon, 26 Jan 2009 19:17:51 +0600 Added: trunk/packages/ugene/trunk/debian/compat =================================================================== --- trunk/packages/ugene/trunk/debian/compat (rev 0) +++ trunk/packages/ugene/trunk/debian/compat 2011-11-02 10:02:09 UTC (rev 8379) @@ -0,0 +1 @@ +5 Added: trunk/packages/ugene/trunk/debian/control =================================================================== --- trunk/packages/ugene/trunk/debian/control (rev 0) +++ trunk/packages/ugene/trunk/debian/control 2011-11-02 10:02:09 UTC (rev 8379) @@ -0,0 +1,27 @@ +Source: ugene +Section: science +Priority: optional +Maintainer: Ubuntu Developers <[email protected]> +XSBC-Original-Maintainer: Ivan Efremov <[email protected]> +Build-Depends: libqt4-dev (>= 4.7.0), libqtwebkit-dev, libqt4-opengl-dev (>= 4.7.0), zlib1g-dev, debhelper (>=5.0.38) +Standards-Version: 3.9.1 +Homepage: http://ugene.unipro.ru + +Package: ugene +Architecture: any +Depends: ${shlibs:Depends}, libqt4-gui (>=4.7.0), libqt4-core (>=4.7.0), ugene-data, ${misc:Depends} +Description: integrated bioinformatics toolkit + Unipro UGENE is a cross-platform visual environment for DNA and protein + sequence analysis. UGENE integrates the most important bioinformatics + computational algorithms and provides an easy-to-use GUI for performing + complex analysis of the genomic data. One of the main features of UGENE + is a designer for custom bioinformatics workflows. + +Package: ugene-data +Architecture: all +Depends: ${misc:Depends} +Description: required data for UGENE - integrated bioinformatics toolkit + Unipro UGENE is a cross-platform visual environment for DNA and protein + sequence analysis. + . + This package contains various data and example files for UGENE. Added: trunk/packages/ugene/trunk/debian/copyright =================================================================== --- trunk/packages/ugene/trunk/debian/copyright (rev 0) +++ trunk/packages/ugene/trunk/debian/copyright 2011-11-02 10:02:09 UTC (rev 8379) @@ -0,0 +1,381 @@ +This package was debianized by Ivan Efremov <[email protected]> on +Mon, 26 Jan 2009 19:18:51 +0600 + +It was downloaded from: http://ugene.unipro.ru/download.html + +Modifications to the original source package: + The following directories have been removed: + ./installer/linux + ./installer/macosx + ./installer/windows + ./src/libs_3rdparty/zlib + since they contain useless for this package data. + +Upstream Author: UniPro <[email protected]> + +Copyright: + Copyright (C) 2008-2011 by UniPro <[email protected]> + +License: + This suite of programs is free software. You can redistribute it + and/or modify it under the terms of the GNU General Public License as + published by the Free Software Foundation; either version 2 of the + License, or (at your option) any later version. + + In other words, you are free to modify, copy, or redistribute this + source code and its documentation in any way you like, but you must + distribute all derivative versions as free software under the same + terms that I've provided my code to you (i.e. the GNU General Public + License). This precludes any use of the code in proprietary or + commercial software unless your source code is made freely available. + + If you wish to use Unipro UGENE code under a different Open Source + license that's not compatible with the GPL (like the Artistic License, BSD + license, or the Netscape Public License), please contact us + ([email protected]) for permission. + + Incorporation into commercial software under non-GPL terms is possible + by obtaining a specially licensed version from Unipro. + Contact '[email protected]' to arrange licensing terms. + + This software is distributed in the hope that it will be useful, but + WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this Unipro UGENE release, in the file LICENSE; + if not, write to the Free Software Foundation, Inc., + 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA. + + See /usr/share/common-licenses/GPL for the complete text of the GPL + + +Files: src/corelibs/U2Formats/src/ABIFormat.cpp + src/corelibs/U2Formats/src/SCFFormat.cpp + src/corelibs/U2Formats/src/IOLibUtils.cpp +Copyright: 1994 Medical Research Council. All rights reserved. +License: + Permission to use, copy, modify and distribute this software and its + documentation for any purpose is hereby granted without fee, provided that + this copyright and notice appears in all copies. + + MRC disclaims all warranties with regard to this software. + + +The File src/plugins_3rdparty/hmm2/src/hmmer2/sre_string.cpp + Copyright (c) 1998 Todd C. Miller <[email protected]> + + Permission to use, copy, modify, and distribute this software for any + purpose with or without fee is hereby granted, provided that the above + copyright notice and this permission notice appear in all copies. + + THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES + WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF + MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR + ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES + WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN + ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF + OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE. + + +The Files in src/plugins_3rdparty/hmm2 + HMMER - Biological sequence analysis with profile hidden Markov models + Copyright (C) 1992-2003 HHMI/Washington University School of Medicine + + This suite of programs is free software. You can redistribute it + and/or modify it under the terms of the GNU General Public License as + published by the Free Software Foundation; either version 2 of the + License, or (at your option) any later version. + + In other words, you are free to modify, copy, or redistribute this + source code and its documentation in any way you like, but you must + distribute all derivative versions as free software under the same + terms that I've provided my code to you (i.e. the GNU General Public + License). This precludes any use of the code in proprietary or + commercial software unless your source code is made freely available. + + If you wish to use HMMER code under a different Open Source license + that's not compatible with the GPL (like the Artistic License, BSD + license, or the Netscape Public License), please contact me + ([email protected]) for permission. + + Incorporation into commercial software under non-GPL terms is possible + by obtaining a specially licensed version from Washington University + School of Medicine. Contact Jack Pincus ([email protected]) to arrange + licensing terms. + + This software is distributed in the hope that it will be useful, but + WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this HMMER release, in the file LICENSE; if not, write to + the Free Software Foundation, Inc., + 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA. + + See /usr/share/common-licenses/GPL for the complete text of the GPL + +Note: +The Files in src/plugins_3rdparty/uhmmer/src/u_spu and + src/plugins_3rdparty/uhmmer/src/uhmmsearch_cell.cpp + are modified sources from the HMMER-Cell project + (ftp://selab.janelia.org/pub/software/hmmer/contrib-2.3.2/HMMerCell_src_02272008.tar.gz) + + Original Copyright: 2008, International Business Machines Corporation + Authors: Kursad Albayraktaroglu, Jizhu Lu + + This files are released under the terms of GPL (v2 or any later version). + + +The Files in src/plugins_3rdparty/umuscle/src/muscle + are PUBLIC DOMAIN (see http://www.drive5.com/muscle/license.htm) + + +The Files src/plugins_3rdparty/psipred/src/seq2mtx.cpp + src/plugins_3rdparty/psipred/src/sspred_avpred.cpp + src/plugins_3rdparty/psipred/src/sspred_hmulti.cpp + Copyright (C) 2000 D.T. Jones + These files are distributed under the terms of custom GPL-compatible + license. See src/plugins_3rdparty/psipred/src/license for details. + + +The Files in src/plugins_3rdparty/primer3/src/primer3_core + Copyright (c) 1996,1997,1998,1999,2000,2001,2004,2006,2007 + Whitehead Institute for Biomedical Research, Steve Rozen + (http://jura.wi.mit.edu/rozen), and Helen Skaletsky + All rights reserved. + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions are + met: + + * Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + * Redistributions in binary form must reproduce the above + copyright notice, this list of conditions and the following disclaimer + in the documentation and/or other materials provided with the + distribution. + * Neither the names of the copyright holders nor contributors may + be used to endorse or promote products derived from this software + without specific prior written permission. + + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS + "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT + LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR + A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT + OWNERS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, + SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT + LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, + DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY + THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT + (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE + OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + + +The Files in src/plugins_3rdparty/hmm3/src/hmmer3 +(except files in src/plugins_3rdparty/hmm3/src/hmmer3/easel) + Copyright (C) 2009 Howard Hughes Medical Institute. + Other copyrights also apply. See the + src/plugins_3rdparty/hmm3/src/hmmer3/COPYRIGHT file for a full list. + + HMMER is distributed under the terms of the GNU General Public License + (GPLv3). + + +The Files in src/plugins_3rdparty/hmm3/src/hmmer3/easel + Copyright (C) 2009 Howard Hughes Medical Institute. + Other copyrights also apply. See the + src/plugins_3rdparty/hmm3/src/hmmer3/easel/COPYRIGHT file for a full list. + + Easel is distributed under the Janelia Farm Software License, a BSD + license. See the src/plugins_3rdparty/hmm3/src/hmmer3/easel/LICENSE file + for more details. + + +The Files in src/plugins/biostruct3d_view/src/gl2ps + GL2PS, an OpenGL to PostScript Printing Library + Copyright (C) 1999-2006 Christophe Geuzaine <[email protected]> + + This program is free software; you can redistribute it and/or + modify it under the terms of either: + + a) the GNU Library General Public License as published by the Free + Software Foundation, either version 2 of the License, or (at your + option) any later version; or + + b) the GL2PS License as published by Christophe Geuzaine, either + version 2 of the License, or (at your option) any later version. + + This program is distributed in the hope that it will be useful, but + WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See either + the GNU Library General Public License or the GL2PS License for + more details. + + +The Files in src/plugins_3rdparty/ball/include and + src/plugins_3rdparty/ball/source + Copyright (C) Oliver Kohlbacher, Hans-Peter Lenhof, Andreas Hildebrandt + and others 1996-2009 + + This library is free software; you can redistribute it and/or + modify it under the terms of the GNU Lesser General Public + License as published by the Free Software Foundation; either + version 2.1 of the License, or (at your option) any later version. + + This library is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + Lesser General Public License for more details. + + +The Files in src/plugins_3rdparty/phylyp/src + version 3.6. (c) Copyright 1993-2004 by the University of Washington. + Written by Joseph Felsenstein, Akiko Fuseki, Sean Lamont, and Andrew Keeffe. + Permission is granted to copy and use this program provided no fee is + charged for it and provided that this copyright notice is not removed. + + +The Files in src/plugins_3rdparty/kalign/src + + Released under GPL - see the 'COPYING' file + + Copyright (C) 2006 Timo Lassmann <[email protected]> + + This program is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program; if not, write to the Free Software + Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA + + Please send bug reports, comments etc. to: + [email protected] + + +The Files in src/plugins_3rdparty/bowtie/src/bowtie/SeqAn-1.1 + Copyright (C) 2007 + + This library is free software; you can redistribute it and/or + modify it under the terms of the GNU Lesser General Public + License as published by the Free Software Foundation; either + version 3 of the License, or (at your option) any later version. + + This library is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + Lesser General Public License for more details. + + +The Files in src/plugins_3rdparty/bowtie/src/bowtie/visualstudio + ISO C9x compliant inttypes.h for Microsoft Visual Studio + Based on ISO/IEC 9899:TC2 Committee draft (May 6, 2005) WG14/N1124 + + Copyright (c) 2006 Alexander Chemeris + + Redistribution and use in source and binary forms, with or without + modification, are permitted provided that the following conditions are met: + + 1. Redistributions of source code must retain the above copyright notice, + this list of conditions and the following disclaimer. + + 2. Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + 3. The name of the author may be used to endorse or promote products + derived from this software without specific prior written permission. + + THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR IMPLIED + WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF + MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO + EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, + SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, + PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; + OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, + WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR + OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF + ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + + +The Files in src/plugins_3rdparty/bowtie/src/bowtie + This files are distributed under Artistic License. See the 'COPYING' file + for details. + + +The Files in src/libs_3rdparty/sqlite3/src + + The author disclaims copyright to this source code. In place of + a legal notice, here is a blessing: + + May you do good and not evil. + May you find forgiveness for yourself and forgive others. + May you share freely, never taking more than you give. + + +The Files src/include/opencl/legacy/cl.h + src/include/opencl/legacy/cl_platform.h + Copyright (c) 2008-2010 The Khronos Group Inc. + + Permission is hereby granted, free of charge, to any person obtaining a + copy of this software and/or associated documentation files (the + "Materials"), to deal in the Materials without restriction, including + without limitation the rights to use, copy, modify, merge, publish, + distribute, sublicense, and/or sell copies of the Materials, and to + permit persons to whom the Materials are furnished to do so, subject to + the following conditions: + + The above copyright notice and this permission notice shall be included + in all copies or substantial portions of the Materials. + + THE MATERIALS ARE PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, + EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF + MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. + IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY + CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, + TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE + MATERIALS OR THE USE OR OTHER DEALINGS IN THE MATERIALS. + + +The Files src/corelibs/U2Private/src/StackWalker.cpp + src/corelibs/U2Private/src/StackWalker.cpp + Copyright (c) 2005-2011, Jochen Kalmbach + All rights reserved. + + Redistribution and use in source and binary forms, with or without modification, + are permitted provided that the following conditions are met: + + Redistributions of source code must retain the above copyright notice, + this list of conditions and the following disclaimer. + Redistributions in binary form must reproduce the above copyright notice, + this list of conditions and the following disclaimer in the documentation + and/or other materials provided with the distribution. + Neither the name of Jochen Kalmbach nor the names of its contributors may be + used to endorse or promote products derived from this software without + specific prior written permission. + THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" + AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, + THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE + ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE + FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES + (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; + LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND + ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT + (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS + SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + + + + +Packaging: + Copyright (C) 2008-2011 by Ivan Efremov <[email protected]> + released under the GPL. Added: trunk/packages/ugene/trunk/debian/rules =================================================================== --- trunk/packages/ugene/trunk/debian/rules (rev 0) +++ trunk/packages/ugene/trunk/debian/rules 2011-11-02 10:02:09 UTC (rev 8379) @@ -0,0 +1,76 @@ +#!/usr/bin/make -f + +export DH_OPTIONS + +UPSTREAM_NAME=ugene +UPSTREAM_VERSION=$(shell uscan --dehs | sed -n 's/.*<upstream-version>\(.*\)<\/upstream-version>.*/\1/p') +UPSTREAM_FOLDER=$(UPSTREAM_NAME)-$(UPSTREAM_VERSION) + +get-orig-source: + uscan --force-download --no-symlink + tar -xzf ../$(UPSTREAM_NAME)-$(UPSTREAM_VERSION).tar.gz + rm -rf $(UPSTREAM_FOLDER)/installer/linux + rm -rf $(UPSTREAM_FOLDER)/installer/macosx + rm -rf $(UPSTREAM_FOLDER)/installer/windows + rm -rf $(UPSTREAM_FOLDER)/src/libs_3rdparty/zlib + GZIP="-9" tar -czf ../$(UPSTREAM_NAME)_$(UPSTREAM_VERSION)+repack.orig.tar.gz $(UPSTREAM_FOLDER) + rm -rf $(UPSTREAM_FOLDER) + + +build: build-arch build-indep + +build-arch: build-arch-stamp +build-arch-stamp: + qmake-qt4 -r + $(MAKE) + touch $@ + +build-indep: build-indep-stamp +build-indep-stamp: + touch $@ + +clean: + dh_testdir + dh_testroot + rm -f build-arch-stamp build-indep-stamp + [ ! -f Makefile ] || $(MAKE) distclean + dh_clean + +install: install-indep install-arch +install-indep: + dh_testdir + dh_testroot + dh_clean -k -i + dh_install -i data /usr/share/ugene + +install-arch: + dh_testdir + dh_testroot + dh_clean -k -s + dh_installdirs -s + + $(MAKE) INSTALL_ROOT=$$(pwd)/debian/ugene install + rm -rf debian/ugene/usr/share/ugene + +binary-common: + dh_testdir + dh_testroot + dh_installchangelogs debian/changelog + dh_installdocs + dh_strip + dh_compress + dh_fixperms + dh_installdeb + export LD_LIBRARY_PATH=$$(pwd)/debian/ugene/usr/lib/ugene:$$(pwd)/debian/ugene/usr/lib64/ugene && dh_shlibdeps + dh_gencontrol + dh_md5sums + dh_builddeb + +binary-indep: build-indep install-indep + $(MAKE) -f debian/rules DH_OPTIONS=-i binary-common + +binary-arch: build-arch install-arch + $(MAKE) -f debian/rules DH_OPTIONS=-s binary-common + +binary: binary-arch binary-indep +.PHONY: build clean binary-indep binary-arch binary install install-indep install-arch Property changes on: trunk/packages/ugene/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/ugene/trunk/debian/source/format =================================================================== --- trunk/packages/ugene/trunk/debian/source/format (rev 0) +++ trunk/packages/ugene/trunk/debian/source/format 2011-11-02 10:02:09 UTC (rev 8379) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/ugene/trunk/debian/watch =================================================================== --- trunk/packages/ugene/trunk/debian/watch (rev 0) +++ trunk/packages/ugene/trunk/debian/watch 2011-11-02 10:02:09 UTC (rev 8379) @@ -0,0 +1,4 @@ +version=3 +opts=dversionmangle=s/\+repack// \ +http://ugene.unipro.ru/download.html \ + downloads/ugene-([\d.]*)\.tar\.gz debian uupdate _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
