Hi,
when trying to build biojava4-live[1] I get:
...
Buildfile: /build/biojava4-live-4.2.12+dfsg/biojava-aa-prop/build.xml
compile:
[mkdir] Created dir:
/build/biojava4-live-4.2.12+dfsg/build/biojava4-aa-prop/classes
[javac] /build/biojava4-live-4.2.12+dfsg/biojava-aa-prop/build.xml:93:
warning: 'includeantruntime' was not set, defaulting to
build.sysclasspath=last; set to false for repeatable builds
[javac] Compiling 32 source files to
/build/biojava4-live-4.2.12+dfsg/build/biojava4-aa-prop/classes
[javac]
/build/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/AminoAcidCompositionTable.java:23:
error: package javax.xml.bind.annotation does not exist
[javac] import javax.xml.bind.annotation.XmlAccessType;
[javac] ^
[javac]
/build/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/AminoAcidCompositionTable.java:24:
error: package javax.xml.bind.annotation does not exist
[javac] import javax.xml.bind.annotation.XmlAccessorType;
[javac] ^
[javac]
/build/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/AminoAcidCompositionTable.java:25:
error: package javax.xml.bind.annotation does not exist
[javac] import javax.xml.bind.annotation.XmlElement;
[javac] ^
[javac]
/build/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/AminoAcidCompositionTable.java:26:
error: package javax.xml.bind.annotation does not exist
[javac] import javax.xml.bind.annotation.XmlRootElement;
[javac] ^
[javac]
/build/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/AminoAcidCompositionTable.java:33:
error: cannot find symbol
[javac] @XmlRootElement(name="compoundtable",
namespace="http://biojava.org";)
[javac] ^
[javac] symbol: class XmlRootElement
...
[javac]
/build/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/PeptidePropertiesImpl.java:148:
error: cannot find symbol
[javac] Unmarshaller u2 = jc2.createUnmarshaller();
[javac] ^
[javac] symbol: class Unmarshaller
[javac] location: class PeptidePropertiesImpl
[javac]
/build/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/MyValidationEventHandler.java:34:
error: method does not override or implement a method from a supertype
[javac] @Override
[javac] ^
[javac]
/build/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/MyValidationEventHandler.java:36:
error: cannot find symbol
[javac] if (ve.getSeverity() == ValidationEvent.FATAL_ERROR ||
ve.getSeverity() == ValidationEvent.ERROR){
[javac] ^
[javac] symbol: variable ValidationEvent
[javac] location: class MyValidationEventHandler
[javac]
/build/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/MyValidationEventHandler.java:36:
error: cannot find symbol
[javac] if (ve.getSeverity() == ValidationEvent.FATAL_ERROR ||
ve.getSeverity() == ValidationEvent.ERROR){
[javac]
^
[javac] symbol: variable ValidationEvent
[javac] location: class MyValidationEventHandler
[javac]
/build/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/MyValidationEventHandler.java:37:
error: cannot find symbol
[javac] ValidationEventLocator locator =
ve.getLocator();
[javac] ^
[javac] symbol: class ValidationEventLocator
[javac] location: class MyValidationEventHandler
[javac]
/build/biojava4-live-4.2.12+dfsg/biojava-aa-prop/src/main/java/org/biojava/nbio/aaproperties/xml/SchemaGenerator.java:36:
error: method does not override or implement a method from a supertype
[javac] @Override
[javac] ^
[javac] 83 errors
BUILD FAILED
/build/biojava4-live-4.2.12+dfsg/biojava-aa-prop/build.xml:93: Compile failed;
see the compiler error output for details.
Any hint how this can be fixed?
Kind regards
Andreas.
[1] https://salsa.debian.org/med-team/biojava4-live
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