On Fri, Oct 19, 2018 at 08:53:22AM +0200, Olivier Sallou wrote:
>
> I just pulled from git, rebuilt and tried with new deb, and got no
> issue, GUI started as expected.
> This kind of error suggest that it did not found in igv classpath the
> htsjdk.jar (not installed or not in in command classpath).
Well, the igv binary package had no dependencies defined. :-(
Something must have failed in the ${java:Depends} subsitution.
For the moment I've added the most important ones and uploaded.
I've verified that the igv_2.4.6+dfsg-1 package in unstable has
Package: igv
Architecture: all
Depends: ${shlibs:Depends},
${misc:Depends},
${java:Depends}
in the source package which results according to apt-cache show igv
in
Package: igv
Version: 2.4.6+dfsg-1
Installed-Size: 17818
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Architecture: all
Depends: junit4, libbatik-java, libbcprov-java, libcofoja-java,
libcommons-io-java, libcommons-logging-java, libcommons-math-java,
libcommons-net-java, libgoogle-gson-java, libguava-java, libhtsjdk-java,
libhttpclient-java, libhttpcore-java, libjama-java, libjargs-java,
libjaxp1.3-java, libjcommon-java, libjfreechart-java, libjgrapht0.8-java,
libjhdf5-java, libjide-oss-java, libjlibeps-java, liblog4j1.2-java,
libswing-layout-java, libxml-commons-external-java
When I now build igv in an up to date unstable chroot no dependencies
are added at all. Thus I've manually added the dependencies that are
obviosly needed to start the program but something is definitely wrong.
Any comment from the Debian Java team?
Kind regards
Andreas.
--
http://fam-tille.de
