Hi Olivier,
thanks a lot for looking into this.
On Tue, Oct 16, 2018 at 10:45:08AM +0200, Olivier Sallou wrote:
>
>
> > sorry for the private ping, but may be you have an idea how to
> > build igv?
> Hi,
> after lots of fixes, I could get igv build (and had to make a few
> updates to d/bin/igv too)
>
> however, I removed the Java 9 module support for igv itself.. Could not
> make it build to provide igv as a module, only as a "old" lib/bin
>
> could not test due to x11 pb, but it builds and do not complain on
> missing libs.
>
> I pushed all my updates
I tried to build your latest commit (eaa95f1c [1]) but I get:
...
Passing through xalan:serializer:jar:debian
Passing through commons-logging:commons-logging:jar:debian
:compileJava FAILED
:compileJava (Thread[Daemon worker,5,main]) completed. Took 0.64 secs.
FAILURE: Build failed with an exception.
* What went wrong:
Could not resolve all files for configuration ':compileClasspath'.
> Could not resolve org.apache.logging.log4j:log4j:debian.
Required by:
project :
> No cached version of org.apache.logging.log4j:log4j:debian available for
offline mode.
> Could not resolve org.apache.logging.log4j:log4j-api:debian.
Required by:
project :
> No cached version of org.apache.logging.log4j:log4j-api:debian available
for offline mode.
> Could not resolve org.apache.logging.log4j:log4j-1.2-api:debian.
Required by:
project :
> No cached version of org.apache.logging.log4j:log4j-1.2-api:debian
available for offline mode.
> Could not resolve org.apache.logging.log4j:log4j-core:debian.
Required by:
project :
> No cached version of org.apache.logging.log4j:log4j-core:debian available
for offline mode.
* Try:
Run with --debug option to get more log output. Run with --scan to get full
insights.
* Exception is:
org.gradle.api.internal.artifacts.ivyservice.DefaultLenientConfiguration$ArtifactResolveException:
Could not resolve all files for configuration ':compileClasspath'.
at
org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.rethrowFailure(DefaultConfiguration.java:918)
at
org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.access$1600(DefaultConfiguration.java:116)
at
org.gradle.api.internal.artifacts.configurations.DefaultConfiguration$ConfigurationFileCollection.getFiles(DefaultConfiguration.java:892)
at
org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.getFiles(DefaultConfiguration.java:404)
...
at
org.gradle.api.internal.artifacts.ivyservice.ivyresolve.ComponentMetaDataResolveState.resolve(ComponentMetaDataResolveState.java:58)
at
org.gradle.api.internal.artifacts.ivyservice.ivyresolve.RepositoryChainComponentMetaDataResolver.findBestMatch(RepositoryChainComponentMetaDataResolver.java:138)
at
org.gradle.api.internal.artifacts.ivyservice.ivyresolve.RepositoryChainComponentMetaDataResolver.findBestMatch(RepositoryChainComponentMetaDataResolver.java:119)
at
org.gradle.api.internal.artifacts.ivyservice.ivyresolve.RepositoryChainComponentMetaDataResolver.resolveModule(RepositoryChainComponentMetaDataResolver.java:92)
... 143 more
* Get more help at https://help.gradle.org
BUILD FAILED in 7s
1 actionable task: 1 executed
dh_auto_build: gradle --info --console plain --offline --stacktrace --no-daemon
--refresh-dependencies --gradle-user-home .gradle -Duser.home=.
-Duser.name=debian -Ddebian.package=igv -Dfile.encoding=UTF-8 --parallel
--max-workers=4 jar returned exit code 1
in a recent pbuilder chroot.
I would love to test igv, but it seems it does not build reliably. :-(
Kind regards
Andreas.
[1]
https://salsa.debian.org/med-team/igv/commit/eaa95f1c5d56003c91984f1e2036bbf8bae7fec0
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