On Thu, Jan 21, 2016 at 09:51:37AM +0100, Thorsten Glaser wrote:
> On Thu, 21 Jan 2016, Andreas Tille wrote:
>
> > I'm lost again with a Java package: gatk[1]. The confusing part from
>
> tglase@tglase:/tmp $ git clone git://anonscm.debian.org/debian-med/gatk.git
> Cloning into 'gatk'...
> Permission denied (publickey).
> fatal: Could not read from remote repository.
Please try
git clone ssh://git.debian.org/git/debian-med/gatk.git
(I hate that what you specify as Vcs-Git can not be used for authorised
clones ...)
> > [WARNING] Some problems were encountered while building the effective model
> > for org.broadinstitute.gatk:gsalib:pom:3.5
> > [WARNING] 'build.plugins.plugin.version' for
> > org.apache.maven.plugins:maven-clean-plugin is missing. @
> > org.broadinstitute.gatk:gatk-aggregator:3.5, /build/gatk-3.5+dfsg/pom.xml,
> > line 421, column 12
>
> Make sure that all <plugin>s have a <version> child node,
> this became required somewhen with Maven 3 AFAIR.
Something like this
gatk(master) $ find . -name pom.xml -exec grep -H '<version>' \{\} \;
./pom.xml: <version>3.5</version>
./pom.xml:
<version>${project.version}</version>
./pom.xml: <version>2.5</version>
./pom.xml: <version>${project.version}</version>
./pom.xml: <version>2.9.1</version>
./pom.xml: <version>${project.version}</version>
./public/pom.xml: <version>3.5</version>
./public/gatk-queue-extensions-public/pom.xml: <version>3.5</version>
./public/gatk-queue-extensions-public/pom.xml:
<version>${project.version}</version>
./public/gatk-queue-extensions-public/pom.xml:
<version>${project.version}</version>
./public/gatk-queue-extensions-public/pom.xml:
<version>${project.version}</version>
./public/gatk-queue-extensions-public/pom.xml:
<version>${project.version}</version>
./public/gatk-queue-extensions-public/pom.xml:
<version>${project.version}</version>
./public/gatk-tools-public/pom.xml: <version>3.5</version>
./public/gatk-tools-public/pom.xml:
<version>${project.version}</version>
./public/gatk-tools-public/pom.xml:
<version>${project.version}</version>
./public/gatk-tools-public/pom.xml:
<version>${project.version}</version>
./public/package-tests/pom.xml: <version>3.5</version>
./public/package-tests/pom.xml: <version>${project.version}</version>
./public/package-tests/pom.xml: <version>${project.version}</version>
./public/gatk-queue/pom.xml: <version>3.5</version>
./public/gatk-queue/pom.xml: <version>${project.version}</version>
...
???
Kind regards
Andreas.
--
http://fam-tille.de
