Something that strikes me as really odd is that there is only the file 04webapps.policy in the directory /etc/tomcat4/policy.d. Am I missing another policy file that's supposed to go in that directory?
You are missing 4 of them, the missing entries that you have manually added are there:
> dpkg -L tomcat4 | grep policy.d/ /etc/tomcat4/policy.d/01system.policy /etc/tomcat4/policy.d/02debian.policy /etc/tomcat4/policy.d/03catalina.policy /etc/tomcat4/policy.d/04webapps.policy /etc/tomcat4/policy.d/99examples.policy
You need to re-install the tomcat4 package with "dpkg -i --confmiss" so the missing conffiles will be installed. Or you can purge tomcat4 and "apt-get install" it again, but you'll lose your configuration in this case.
Stefan
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