Package: wnpp Severity: wishlist Owner: Andreas Tille <ti...@debian.org>
* Package name : plasmidseeker Version : 1.0 Upstream Author : Bioinfo, IMCB, UT * URL : https://github.com/bioinfo-ut/PlasmidSeeker * License : BSD-3-clause Programming Lang: Perl Description : identification of known plasmids from whole-genome sequencing reads PlasmidSeeker is a k-mer based program for the identification of known plasmids from bacterial whole genome sequencing reads. . PlasmidSeeker that enables the detection of plasmids from bacterial WGS data without read assembly. The PlasmidSeeker algorithm is based on k-mers and uses k-mer abundance to distinguish between plasmid and bacterial sequences. The performance of PlasmidSeeker was tested on a set of simulated and real bacterial WGS samples, resulting in 100% sensitivity and 99.98% specificity. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/plasmidseeker
