Package: wnpp Severity: wishlist Owner: Andreas Tille <ti...@debian.org>
* Package name : iqtree Version : 1.3.8 Upstream Author : Lam Tung Nguyen <tung.ngu...@univie.ac.at>, Bui Quang Minh <minh....@univie.ac.at> * URL : http://www.cibiv.at/software/iqtree/ * License : GPL Programming Lang: C++ Description : efficient phylogenetic software by maximum likelihood IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features among others: . * A novel fast and effective stochastic algorithm to estimate maximum likelihood trees. IQ-TREE outperforms both RAxML and PhyML in terms of likelihood while requiring similar amount of computing time (see Nguyen et al., 2015) * An ultrafast bootstrap approximation to assess branch supports (see Minh et al., 2013). * A wide range of substitution models for binary, DNA, protein, codon, and morphological alignments. * Ultrafast model selection for all data types, 10 to 100 times faster than jModelTest and ProtTest. * Finding best partition scheme like PartitionFinder. * Partitioned models with mixed data types for phylogenomic (multi- gene) alignments, allowing for separate, proportional, or joint branch lengths among genes. * Supporting the phylogenetic likelihod library (PLL) (see Flouri et al., 2014) Remark: This package is maintained by the Debian Med team at git://anonscm.debian.org/debian-med/iqtree.git
