Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Control: block 787977 by -1
* Package name : pbdagcon Version : git1d12e13 Upstream Author : Pacific Biosciences <dev...@pacificbiosciences.com> * URL : https://github.com/PacificBiosciences/pbdagcon * License : BSD** Programming Lang: C++, Python Description : sequence consensus algorithm implementation based on directed acyclic graphs pbdagcon is a tool that implements DAGCon (Directed Acyclic Graph Consensus), which is a sequence consensus algorithm based on using directed acyclic graphs to encode multiple sequence alignment. . It uses the alignment information from blasr to align sequence reads to a "backbone" sequence. Based on the underlying alignment directed acyclic graph, it will be able to use the new information from the reads to find the discrepancies between the reads and the "backbone" sequences. A dynamic programming process is then applied to the DAG to find the optimum sequence of bases as the consensus. The new consensus can be used as a new backbone sequence to iteratively improve the consensus quality. This package is part of the SMRTAnalysis suite and also a dependency of wgs-assembler. It will be handled by the Debian Med team. ** I'm double-checking the license of this component at https://github.com/PacificBiosciences/pbdagcon/issues/40.
