Package: wnpp Severity: wishlist Owner: Charles Plessy <ple...@debian.org>
Package name : staden-io-lib Version : 1.11.6.1 Programming Lang: C Description : The Staden io_lib and its associated programs (three binary packages). debian/control -------------- Source: staden-io-lib Section: science Priority: optional Maintainer: Debian-Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> DM-Upload-Allowed: yes Uploaders: Charles Plessy <ple...@debian.org> Build-Depends: debhelper (>= 7), autotools-dev, quilt Standards-Version: 3.8.1 Homepage: http://staden.sourceforge.net/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/staden-io-lib/trunk/?rev=0&sc=0 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/staden-io-lib/trunk/ Package: staden-io-lib-utils Section: science Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} Description: programs for maniuplating DNA sequencing files The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS Windows. . This package contains the programs that are distributed with the Staden io_lib for manipulating and converting sequencing data files, and in particular files to maniuplate short reads generated by second and third generation sequencers and stored in SRF format. Package: libstaden-read-dev Section: libdevel Architecture: any Depends: libstaden-read1 (= ${binary:Version}), ${misc:Depends} Description: development files for libstaden-read This package contains the header and development files needed to build programs and packages using the Staden io_lib. Package: libstaden-read1 Section: libs Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} Description: Staden library for reading and writing DNA sequencing results. This package contains the Staden io_lib, that is renamed in Debian and Fedora ‘staden-read’ instead of ‘read’. This library supports various DNA sequence read formats, in particular SCF, ABI, ALF, CTF, ZTR, SFF and SRF. debian/copyright ---------------- Format: Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’. Name: io-lib Contact: James Bonfield, Simon Dear, Rodger Staden (io-lib) Source: http://qa.debian.org/watch/sf.php/staden/io_lib-1.11.6.1.tar.gz Copyright: © 1994 Medical Research Council © Genome Research Ltd (GRL) License: GRL or MRC Upstream-Comment: Newer files and changes are copyright Genome Research Ltd using the following compatible BSD licence. Disentangling which is which is somewhat tricky, but it's sufficient to say that work in the CVS tree from August 2002 will be bound by the GRL licence instead. License: GRL Copyright (c), Genome Research Ltd (GRL). All rights reserved. . Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: . * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. . * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. . * Neither the name of the Genome Research Limited nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY GRL ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GRL BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. License: MRC Copyright (c) Medical Research Council 1994. All rights reserved. . Permission to use, copy, modify and distribute this software and its documentation for any purpose is hereby granted without fee, provided that this copyright and notice appears in all copies. . This file was written by James Bonfield, Simon Dear, Rodger Staden, as part of the Staden Package at the MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom. . MRC disclaims all warranties with regard to this software. Files: io_lib/open_trace_file.c License: GRL or MRC, and 454 This files contains some source code owned by 454 Life Sciences Corporation. License: 454 Copyright (c)[2001-2005] 454 Life Sciences Corporation. All Rights Reserved. . THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. . IN NO EVENT SHALL LICENSOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE. . Permission to use, copy, modify and distribute this software and its documentation for any purpose is hereby granted without fee, provided that this copyright and notice appears in all copies. Files: io_lib/sff.c: Copyright: © Genome Research Limited (GRL) © 2001-2005 454 Life Sciences Corporation. License: GRL and 454 This file contains some extracts from a file owened by the 454 Life Sciences Corporation. Files: debian/* Copyright: 2008–2009 Charles Plessy <ple...@debian.org> License: PD Please treat these files as if they were in your country’s public domain. -- To UNSUBSCRIBE, email to debian-devel-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
